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"Compare all differences between two source code folders, including binary files" matching MCP servers:

  • hpo-link

    berntpopp
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    MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.
    Last updated
    17
    MIT

  • Rosetta MCP Server

    Arielbs
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    An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.
    Last updated
    19
    138
    17
    MIT

  • DICOMweb MCP Server

    PantelisGeorgiadis
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    An MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants. It lets any MCP-capable client search studies, series and instances, inspect metadata, read Structured and Encapsulated PDF Reports, and render image frames — all through natural language.
    Last updated
    9
    83
    3
    MIT

  • mcp-icd10

    stabgan
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    quality
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    Offline MCP server for ICD medical code lookup, search, and crosswalk translation with 124K codes and 102K mappings, all local with zero network calls.
    Last updated
    5
    3
    MIT

  • clinicaltrials-mcp

    agents100x
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    Enables conversational access to 400,000+ clinical trials on ClinicalTrials.gov, allowing users to search, compare, and retrieve trial details using plain English through MCP-compatible clients like Cursor and Claude Desktop.
    Last updated
    5
    3
    MIT

  • Define-XML MCP Server

    defineEditor
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    A TypeScript MCP server for interacting with CDISC Define-XML 2.0 and 2.1 files, enabling users to load, search, and retrieve clinical data metadata including datasets, variables, and codelists. It supports local file processing with document caching and provides responses in both JSON and Markdown formats.
    Last updated
    13

  • DICOM/HL7/FHIR

    NyxToolsDev
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    Built by a healthcare IT engineer with 19 years of PACS/RIS/integration experience. Bridges DICOM, HL7v2, and FHIR — maps between standards, decodes vendor private tags (GE, Siemens, Philips), generates Mirth Connect channels, and explains integration patterns. 12 tools covering tag lookup, message parsing, cross-standard mapping, and channel generation.
    Last updated
    17
    4
    MIT

  • HealthClawGuardrails

    aks129
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    Open-source guardrails between AI agents and FHIR clinical data — PHI redaction, immutable audit, step-up auth, tenant isolation. MCP server + OpenAI/Gemini adapters. A healthclaw.io project.
    Last updated
    29
    27
    MIT

  • NiiVue MCP Server

    gaiborjosue
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    Provides fast lexical and optional semantic search over NiiVue neuroimaging visualization library documentation and API reference. Enables LLMs to query guides, retrieve API documentation from TypeScript source, and access structured information through cached BM25 and embedding-based search.
    Last updated
    6
    32
    1
    BSD 2-Clause "Simplified"

  • MCP FishBase Server

    lundgrenalex
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    Provides access to FishBase marine biology data including species information, ecological data, distribution records, and morphological details. Enables species name validation and conversion between common and scientific names through natural language queries.
    Last updated
    8

  • Clinical Trials MCP Server

    BACH-AI-Tools
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    license
    C
    quality
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    maintenance
    Enables searching, analyzing, and retrieving real-time clinical trial data from ClinicalTrials.gov via 18 specialized MCP tools, including filters for condition, location, phase, and eligibility.
    Last updated
    17
    14
    3
    MIT

  • ezyVet MCP Server

    NoBanks
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    license
    C
    quality
    C
    maintenance
    Enables AI agents to manage veterinary practice data through ezyVet API, including animals, contacts, appointments, consults, invoices, and products.
    Last updated
    8
    MIT
  • Bio-MCP FastQC Server by bio-mcp

    Bio-MCP FastQC Serverofficial

    bio-mcp
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    license
    -
    quality
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    maintenance
    Enables AI assistants to perform quality control analysis on high-throughput sequencing data using FastQC and MultiQC. It supports single-file and batch processing of FASTQ/FASTA files and generates comprehensive, interactive summary reports.
    Last updated
    MIT