"Assistance with SQLite Database" matching MCP servers:

Monitors PubMed and medRxiv for configurable research topics, summarizes papers using a local LLM, and stores deduplicated results in a local database.

Enables coding agents to interact with the Reactome pathway database, including search, lookup, hierarchy traversal, SBML/SBGN export, and gene-set enrichment analysis.

Provides direct SQL access to a locally hosted Reactome database, enabling schema discovery, guarded read-only queries, and ergonomic helpers over the full relational schema.

Enables natural language querying of EFSA's OpenFoodTox database containing 8,006 chemical substances with toxicity data, safety assessments, risk limits, and genotoxicity studies for food additives, pesticides, and contaminants.

Search 200M+ patents and scientific literature in natural language using PatSnap's global R&D intelligence database.

Enables searching biomedical images (X-rays, CT/MRI, clinical photos, etc.) from the Open-i database using natural language queries, returning image results as Markdown links.

Enables agents to interact with a clinic booking API, including listing specialties, doctors, and a patient's appointments, and booking or cancelling appointments when the active profile permits, while preserving the caller's authority and screening tool descriptions for safety.

An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

Enables LLM agents to search biomedical literature, retrieve article details, find related papers, manage caching, and download open-access full texts through MCP with structured, agent-friendly responses.

Provides seamless integration with FHIR APIs, enabling AI/LLM tools to search, retrieve, and analyze clinical healthcare data with support for SMART-on-FHIR authentication and multiple transport protocols.

MCP server for the STRING protein–protein interaction database, hosted by STRING at mcp.string-db.org. Adapted for LLM grounding: responses are size-limited and include metadata and notes on interpretation and next steps. Tools cover identifier resolution, interaction networks and evidence, functional and PPI enrichment, and sequence similarity search.

MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.

Integrates AlphaFold DB and eight other biomedical data sources into MCP tools for variant clinical reporting, disease-target analysis, structural intelligence, and drug repurposing, with results persisted to a local SQLite knowledge graph.

Enables users to store and query their own medical data—labs, medications, diagnoses, wearables, and food logs—in a local Postgres database and interact with it through any MCP client, with deterministic safety checks.

An MCP server that provides tools for searching and fetching protein data from the UniProt database using the unipressed library.

An MCP server for querying the KEGG bioinformatics database, providing tools, resource templates, and guided prompts for pathways, genes, compounds, and more.

Answers medication questions from official FDA labels with section citations, resolves drug names via RxNorm, and reports FDA recalls and shortages.

Enables querying the openFDA drug adverse event database for pharmacovigilance work-ups: case searches, counts and demographic/outcome breakdowns, disproportionality measures (ROR/PRR with Mantel-Haenszel adjustment), and empirical Bayes (MGPS/EBGM) signal scores, including bulk screening and stratification by sex, age, or year alongside confounder-adjusted analyses.

Enables searching and retrieving molecular hydrogen medical literature from H2 Papers database, with per-paper safety notes always included in results.

Enables querying the WormBase database for C. elegans and nematode genomics data, including gene information, protein sequences, phenotypes, interactions, and expression patterns through natural language.