"XML" matching MCP servers:

• Rosetta MCP Server

  Arielbs

  A

  license

  A

  quality

  F

  maintenance

  An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

  Updated 4 months ago (2026-04-05 20:48 UTC)

  19

  75

  18

  MIT

• QML-MCP

  des137

  A

  license

  -

  quality

  D

  maintenance

  Enables quantum machine learning operations using Qiskit, including executing quantum circuits, computing quantum kernels, training variational quantum classifiers, and evaluating quantum ML models.

  Updated 8 months ago (2025-12-22 00:41 UTC)

  MIT

• pymol-cursor-mcp

  truong128

  F

  license

  -

  quality

  D

  maintenance

  Control PyMOL from Cursor via natural language. Enables describing molecular structures and styles in plain language to execute PyMOL commands through XML-RPC.

  Updated 3 months ago (2026-05-03 01:11 UTC)

  1

• Math-Physics-ML MCP System

  andylbrummer

  A

  license

  -

  quality

  C

  maintenance

  Provides GPU-accelerated scientific computing capabilities including symbolic mathematics, quantum wave mechanics simulations, molecular dynamics, and neural network training through four specialized MCP servers.

  Updated 3 months ago (2026-05-01 22:37 UTC)

  2

  MIT