"SQLite" matching MCP servers:

• hpo-link

  berntpopp

  A

  license

  A

  quality

  B

  maintenance

  MCP server that provides tools for querying the Human Phenotype Ontology (HPO) including term lookup, hierarchy exploration, cross-ontology mappings, and gene-phenotype-disease associations, all grounded in a local SQLite database for fast offline lookups.

  Last updated 2026-07-16

  17

  MIT

• AlphaFold Sovereign MCP

  smaniches

  A

  license

  A

  quality

  B

  maintenance

  Integrates AlphaFold DB and eight other biomedical data sources into MCP tools for variant clinical reporting, disease-target analysis, structural intelligence, and drug repurposing, with results persisted to a local SQLite knowledge graph.

  Last updated 2026-07-17

  29

  3

  Apache 2.0