"Qdrant MCP Server" matching MCP servers:

• clinicaltrialsgov-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  Empowers AI agents with direct access to the official ClinicalTrials.gov database, enabling programmatic searching, retrieval, and analysis of clinical study data through a Model Context Protocol interface.

  Last updated 2026-07-09

  7

  1,393

  81

  Apache 2.0

• pubmed-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  A bridge connecting AI agents to NCBI's PubMed database through the Model Context Protocol, enabling seamless searching, retrieval, and analysis of biomedical literature and data.

  Last updated 2026-06-30

  10

  2,427

  121

  Apache 2.0

• Gen3 MCP Server

  delocalizer

  A

  license

  A

  quality

  D

  maintenance

  A Model Context Protocol (MCP) server for interacting with Gen3 data commons, with GraphQL query validation to reduce hallucinations.

  Last updated 2025-06-13

  5

  4

  MIT

• pubchem-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  Enables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.

  Last updated 2026-07-03

  10

  944

  9

  Apache 2.0

• Rosetta MCP Server

  Arielbs

  A

  license

  A

  quality

  F

  maintenance

  An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

  Last updated 2026-04-05

  19

  238

  16

  MIT
• 

  Noctua MCP Serverofficial

  geneontology

  A

  license

  A

  quality

  C

  maintenance

  Enables editing and querying of Gene Ontology Causal Activity Models (GO-CAMs) through the Barista API. Supports model creation, individual and fact management, evidence addition, and causal pathway construction for biological knowledge representation.

  Last updated 2025-11-01

  18

  BSD 3-Clause

• uniprot-mcp

  smaniches

  A

  license

  A

  quality

  A

  maintenance

  Auditable UniProt MCP server with per-query SHA-256 provenance and offline replay

  Last updated 2026-07-13

  41

  3

  Apache 2.0

• ncbi-datasets-mcp

  syntheticgio

  F

  license

  A

  quality

  A

  maintenance

  An MCP server that gives Claude access to NCBI Datasets v2 — search genome assembly metadata, retrieve taxonomy records, and download data packages without leaving your conversation.

  Last updated 2026-06-22

  10
• 

  PDBe MCP Serversofficial

  PDBeurope

  A

  license

  A

  quality

  A

  maintenance

  Provides seamless access to the Protein Data Bank in Europe (PDBe) API and search capabilities, enabling AI clients to query protein structures, perform advanced searches, and retrieve structural biology data.

  Last updated 2026-07-16

  33

  36

  Apache 2.0

• MCP GeneLab Server

  sbl-sdsc

  A

  license

  A

  quality

  B

  maintenance

  Converts natural language queries into Cypher queries against the NASA GeneLab Knowledge Graph, enabling AI-assisted analysis of spaceflight experiments and their biological effects.

  Last updated 2026-06-30

  12

  3

  BSD 3-Clause

• uniprot-unipressed-mcp

  pansapiens

  A

  license

  A

  quality

  D

  maintenance

  An MCP server that provides tools for searching and fetching protein data from the UniProt database using the unipressed library.

  Last updated 2026-01-21

  2

  MIT

• lineageverse-mcp

  colganwi

  A

  license

  A

  quality

  C

  maintenance

  MCP server for single-cell lineage tracing analysis, enabling conversational reconstruction, visualization, and heritability analysis of lineage trees using Cassiopeia, pycea, and treedata.

  Last updated 2026-07-15

  18

  MIT
• 

  WormBase MCP Serverofficial

  WormBase

  A

  license

  A

  quality

  D

  maintenance

  Enables querying the WormBase database for C. elegans and nematode genomics data, including gene information, protein sequences, phenotypes, interactions, and expression patterns through natural language.

  Last updated 2025-12-12

  12

  1

  MIT

• Enrichr MCP Server

  tianqitang1

  A

  license

  A

  quality

  B

  maintenance

  Enables gene set enrichment analysis using the Enrichr API across hundreds of gene set libraries including Gene Ontology, pathways, diseases, tissues, drugs, and transcription factors. Returns only statistically significant results for interpretation.

  Last updated 2026-07-14

  2

  357

  15

  MIT

• Ensembl MCP Server

  effieklimi

  A

  license

  A

  quality

  D

  maintenance

  A Model Context Protocol server providing LLMs with access to the Ensembl genomics database, enabling AI assistants to query gene information, sequences, variants, and other genomic data across multiple species.

  Last updated 2026-02-11

  10

  8

  JavaScript

  MIT

• Omics AI MCP Server

  mfiume

  A

  license

  A

  quality

  D

  maintenance

  Enables AI agents to conversationally interact with genomics research networks for data analysis and discovery across multiple Omics AI Explorer platforms. It provides tools for exploring data collections, examining table schemas, and executing SQL queries against datasets like Viral AI and Neuroscience AI.

  Last updated 2025-06-20

  6

  1

  MIT

• BCI-MCP Server

  enkhbold470

  A

  license

  A

  quality

  C

  maintenance

  A framework that integrates Brain-Computer Interface technology with the Model Context Protocol to enable real-time neural signal processing and AI-powered interactions for healthcare, accessibility, and research applications.

  Last updated 2026-07-04

  12

  11

  MIT

• MCP Sequence Simulation Server

  coreymhudson

  A

  license

  A

  quality

  D

  maintenance

  Enables the generation, mutation, and evolution of DNA and protein sequences using various evolutionary models and phylogenetic algorithms. It supports realistic next-generation sequencing read simulation and population-level evolutionary tracking for bioinformatics research and testing.

  Last updated 2025-06-17

  6

  BSD 2-Clause "Simplified"

• PDB MCP Server

  Augmented-Nature

  F

  license

  A

  quality

  F

  maintenance

  PDB MCP Server

  Last updated 2025-12-21

  5

  25

• Wegene Assistant MCP Server

  xraywu

  F

  license

  A

  quality

  D

  maintenance

  Leverages large language models to analyze users' WeGene genetic testing reports, providing access to report data via custom URI schemes and enabling profile and report management through OAuth authentication and API utilization.

  Last updated 2025-02-06

  4

  4