A
licenseB
qualityD
maintenanceMCP server providing access to the BERtron API for aggregating genomic and environmental data from multiple BER data sources, enabling geospatial search and health checks.
Last updated
8
3
BSD 3-Clause
61,828 servers. Last updated
Search Relevance ↓
Recent Usage ↓
Date Added ↓
Date Updated ↓
Weekly Downloads ↓
GitHub Stars ↓
Recent GitHub Stars ↓
Matching MCP tools:
Matching MCP Connectors:
io.github.pipeworx-io
com.mcparmory
io.github.UnbearableDev
io.github.digitalgremlin
"Extracting data from GitHub" matching MCP servers:
- AlicenseCqualityDmaintenanceA server that enables AI assistants to interact with cancer genomics data from cBioPortal, allowing users to explore cancer studies, access genomic data, and retrieve mutations and clinical information.Last updated175MIT
reactome-mcpofficial
Alicense-qualityFmaintenanceEnables AI assistants to search, browse, analyze, and export biological pathway data from Reactome through natural language.Last updated5Apache 2.0- Alicense-qualityDmaintenanceEnables molecular generation, optimization, and analysis through NVIDIA MolMIM API. Supports generating drug-like molecules with desired properties, extracting molecular embeddings, and exploring chemical space around seed molecules.Last updatedMIT
- Alicense-qualityDmaintenanceEnables querying and retrieving bacterial and viral genomic data, features, antimicrobial resistance, and epitopes from the BV-BRC API using natural language.Last updatedMIT
- Alicense-qualityDmaintenanceEnables AI assistants to generate publication-quality bioinformatics visualizations (volcano plots, PCA, heatmaps, etc.) directly from raw biological data.Last updatedMIT
- Alicense-qualityCmaintenanceProvides access to AlphaFold predicted protein 3D structures from EBI, enabling retrieval of prediction metadata, summaries, annotations, and UniProt data.Last updated18MIT
- Alicense-qualityDmaintenanceA server providing access to NCBI E-utilities API for searching and retrieving data from databases like PubMed, Protein, and Nucleotide.Last updatedMIT
- -license-quality-maintenanceThis server enables multi-agent conversations for interacting with Cirro's biological data platform through its OpenAPI interface, auto-generated using AG2's MCP builder.Last updated
- AlicenseAqualityAmaintenanceMCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experimentsLast updated2013037AGPL 3.0
- AlicenseAqualityBmaintenanceMCP server that provides tools to query harmonized gene-disease validity data from the Gene Curation Coalition, supporting consensus and conflict detection for gene-disease assertions.Last updated12MIT
- AlicenseAqualityDmaintenanceA Model Context Protocol (MCP) server for interacting with Gen3 data commons, with GraphQL query validation to reduce hallucinations.Last updated54MIT
- FlicenseAqualityCmaintenanceEnables analysis of bulk RNA-seq data using natural language queries, executing R and Python in a Docker container with automatic sample anonymization and privacy controls.Last updated7
- AlicenseAqualityAmaintenanceEnables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.Last updated109449Apache 2.0
- AlicenseAqualityDmaintenanceA Model Context Protocol server that interfaces with Biomart databases, allowing models to discover biological datasets, explore attributes/filters, retrieve biological data, and translate between different biological identifiers.Last updated87MIT
- AlicenseAqualityCmaintenanceAn MCP server for searching and accessing RNA sequencing datasets from the European Nucleotide Archive (ENA), supporting bulk, single-cell, and spatial transcriptomics with advanced filtering and download capabilities.Last updated111Apache 2.0
- AlicenseAqualityAmaintenanceAn MCP server that provides mouse genetics data from Mouse Genome Informatics (MGI), enabling LLM agents to query markers, mutations, alleles, phenotypes, and disease models.Last updated131MIT
- AlicenseAqualityBmaintenanceMCP server that exposes the UniProt REST API to LLM clients, enabling search and retrieval of protein data via tools like search_uniprotkb, get_entry, and map_ids.Last updated7MIT
- AlicenseAqualityAmaintenanceAn MCP server that interfaces with Gigwa for genotyping data import, analysis, and audit, enabling users to perform complex workflows through natural language commands.Last updated4229Apache 2.0
- FlicenseAqualityAmaintenanceAn MCP server that gives Claude access to NCBI Datasets v2 — search genome assembly metadata, retrieve taxonomy records, and download data packages without leaving your conversation.Last updated10