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  • fluxforge

    ali-kishk
    A
    license
    B
    quality
    B
    maintenance
    Predicts CRISPR gene dependencies and drug targets by integrating literature, regulatory/PPI networks, and genome-scale metabolic models.
    18
    Apache 2.0
  • Cytoscape MCP Server by cytoscape

    Cytoscape MCP Serverofficial

    cytoscape
    A
    license
    Not graded
    quality
    A
    maintenance
    An embedded MCP server for Cytoscape Desktop that lets AI agents load networks, set active views, and control the desktop application over HTTP.
    6
    BSD 3-Clause

  • string-mcp

    meringlab
    A
    license
    Not graded
    quality
    B
    maintenance
    MCP server that exposes STRING database functionality, allowing AI agents to resolve protein identifiers, retrieve interaction networks, perform homology lookups, and run functional enrichment analysis.
    5
    MIT

  • string-db

    pipeworx-io
    A
    license
    Not graded
    quality
    C
    maintenance
    MCP server for STRING-DB that enables querying protein-protein interaction networks, functional enrichment, and homology mappings.
    9
    MIT

  • microbe-mcp

    Presisitence
    A
    license
    Not graded
    quality
    C
    maintenance
    An MCP server that wraps R scripts for microbiome and amplicon (16S/ITS) analysis, providing tools for alpha/beta diversity, differential abundance, networks, and more, with PNG/PDF outputs.
    MIT

  • Omics AI MCP Server

    mfiume
    A
    license
    A
    quality
    D
    maintenance
    Enables AI agents to conversationally interact with genomics research networks for data analysis and discovery across multiple Omics AI Explorer platforms. It provides tools for exploring data collections, examining table schemas, and executing SQL queries against datasets like Viral AI and Neuroscience AI.
    6
    1
    MIT

  • STRING MCP Server

    munch-group
    A
    license
    B
    quality
    D
    maintenance
    Provides access to the STRING protein-protein interaction database for mapping identifiers, retrieving interaction networks, and performing functional enrichment analysis. It enables users to explore protein partners, pathways, and cross-species homology through natural language interactions.
    9
    1
    ISC

  • STRING-MCP

    MCPmed
    A
    license
    B
    quality
    D
    maintenance
    A Model Context Protocol server that provides tools for interacting with the STRING database to analyze protein-protein interaction networks and functional enrichment. It enables users to map protein identifiers, retrieve interaction data, and generate biological network visualizations through natural language interfaces.
    11
    3
    BSD 3-Clause