"An MCP server supporting MySQL connection with SSL mode required" matching MCP servers:

• Rosetta MCP Server

  Arielbs

  A

  license

  A

  quality

  F

  maintenance

  An MCP server that enables AI coding assistants to interact with Rosetta, PyRosetta, and Biotite for running RosettaScripts, validating XML, translating between Rosetta and Biotite, scoring structures, and querying documentation.

  Updated 4 months ago (2026-04-05 20:48 UTC)

  19

  112

  18

  MIT

• kegg-mcp-server

  Lucas-Servi

  A

  license

  A

  quality

  A

  maintenance

  An MCP server for querying the KEGG bioinformatics database, providing tools, resource templates, and guided prompts for pathways, genes, compounds, and more.

  Updated 8 days ago (2026-08-06 20:40 UTC)

  34

  3

  MIT

• PDB MCP Server

  Augmented-Nature

  F

  license

  A

  quality

  F

  maintenance

  PDB MCP Server

  Updated 8 months ago (2025-12-21 10:07 UTC)

  5

  25

• AlphaFold MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  D

  maintenance

  AlphaFold MCP Server

  Updated 8 months ago (2025-12-21 10:07 UTC)

  19

  35

• ChEMBL MCP Server

  Augmented-Nature

  F

  license

  B

  quality

  D

  maintenance

  ChEMBL MCP Server

  Updated 8 months ago (2025-12-21 10:00 UTC)

  27

  89

• BWA MCP Server

  bio-mcp

  A

  license

  -

  quality

  D

  maintenance

  Enables AI assistants to perform DNA/RNA sequence alignment using BWA (Burrows-Wheeler Aligner), supporting both short and long read alignment to reference genomes with indexing, BWA-MEM, and BWA-backtrack algorithms.

  Updated a year ago (2025-07-10 00:43 UTC)

  MIT

• PubMed-MCP-Server

  JackKuo666

  A

  license

  -

  quality

  F

  maintenance

  🔍 Enable AI assistants to search, access, and analyze PubMed articles through a simple MCP interface.

  Updated a year ago (2025-05-08 12:45 UTC)

  124

  MIT
• 

  Glygen MCP Serverofficial

  glygener

  F

  license

  -

  quality

  B

  maintenance

  MCP server that enables querying GlyGen for summaries of proteins, glycans, sites, biomarkers, and diseases.

  Updated a month ago (2026-07-15 16:36 UTC)

• PubTator-MCP-Server

  JackKuo666

  A

  license

  -

  quality

  D

  maintenance

  🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.

  Updated a year ago (2025-03-31 16:46 UTC)

  9

  MIT

• protein-mcp-server

  cyanheads

  A

  license

  -

  quality

  A

  maintenance

  A Model Context Protocol server providing programmatic access to 3D protein structural data from RCSB PDB, PDBe, and UniProt, enabling search, retrieval, comparison, and analysis of protein structures.

  Updated 15 days ago (2026-07-30 18:07 UTC)

  128

  5

  Apache 2.0

• ChemDraw Server

  tom832

  A

  license

  -

  quality

  D

  maintenance

  Provides chemical informatics endpoints for converting between chemical names and SMILES, processing molecule structures, and comparing molecules, with MCP compatibility.

  Updated a month ago (2026-07-01 07:25 UTC)

  4

  MIT

• BioLab MCP Server

  brahimbattou

  A

  license

  -

  quality

  C

  maintenance

  Unified MCP server providing AI-agent-ready access to AlphaFold, PubMed, ChEMBL, Ensembl, and 37+ scientific databases.

  Updated 2 months ago (2026-06-08 20:26 UTC)

  MIT

• ketcher-mcp-server

  lunnynight

  A

  license

  -

  quality

  C

  maintenance

  MCP server for Ketcher chemical structure editor integration, enabling SMILES/MOL/InChI conversion, image generation, molecular property calculation, and validation.

  Updated 5 months ago (2026-03-10 02:41 UTC)

  MIT

• UniProt MCP Server

  vitamin3615

  A

  license

  -

  quality

  D

  maintenance

  An MCP server that enables language models to fetch protein information from the UniProt database, including protein details, sequences, functions, and structures.

  Updated a year ago (2025-04-01 01:49 UTC)

  MIT

• bvbrc-mcp-server

  cucinellclark

  F

  license

  -

  quality

  B

  maintenance

  MCP server for querying BV-BRC biological data, submitting analysis jobs (assembly, annotation, BLAST, etc.), and managing workspace files via natural language.

  Updated 21 days ago (2026-07-24 21:13 UTC)

• bioRxiv-MCP-Server

  JackKuo666

  F

  license

  -

  quality

  F

  maintenance

  🔍 Enable AI assistants to search and access bioRxiv papers through a simple MCP interface. The bioRxiv MCP Server provides a bridge between AI assistants and bioRxiv's preprint repository through the Model Context Protocol (MCP). It allows AI models to search for biology preprints and access their

  Updated a year ago (2025-03-18 13:21 UTC)

  24

• clinicaltrialsgov-mcp-server

  cyanheads

  A

  license

  A

  quality

  B

  maintenance

  Empowers AI agents with direct access to the official ClinicalTrials.gov database, enabling programmatic searching, retrieval, and analysis of clinical study data through a Model Context Protocol interface.

  Updated 19 days ago (2026-07-26 14:09 UTC)

  7

  1,149

  87

  Apache 2.0

• Evo2 MCP Server

  not-a-feature

  A

  license

  A

  quality

  C

  maintenance

  Enables genomic sequence analysis through the Evo 2 model, supporting DNA sequence scoring, embedding, generation, and variant effect prediction with multiple model checkpoints (7B, 40B, 1B parameters).

  Updated 4 months ago (2026-04-13 12:36 UTC)

  6

  2

  LGPL 3.0

• pubchem-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  Enables AI agents and applications to search, retrieve, and analyze chemical compounds, substances, and bioassays from PubChem's vast chemical information database through comprehensive tools for chemical research and discovery.

  Updated 15 days ago (2026-07-30 18:07 UTC)

  10

  404

  9

  Apache 2.0

• pubmed-mcp-server

  cyanheads

  A

  license

  A

  quality

  A

  maintenance

  A bridge connecting AI agents to NCBI's PubMed database through the Model Context Protocol, enabling seamless searching, retrieval, and analysis of biomedical literature and data.

  Updated 15 days ago (2026-07-30 18:07 UTC)

  11

  3,327

  134

  Apache 2.0