"A server for running bioinformatics tools" matching MCP servers:

Provides AI agents with real-time ground truth about what's actually running on the machine, including live agent sessions, listening TCP ports, loaded daemons, and system stats. It reads directly from the OS via fixed commands, ensuring agents never rely on stale docs or transcripts.

Enables AI agents to perform local video, audio, and file operations inside an isolated workspace, including cutting/concat videos, extracting audio, transcribing, and managing files, with typed responses and background job support.

MCP server enabling Claude Code to capture screenshots of Windows applications through WSL2, allowing AI to diagnose UI errors and verify layouts.

MCP server for personal knowledge management providing AI-powered tools for semantic search, audio transcription, image generation, and PPT creation.

An MCP server for searching and downloading books from Library Genesis, supporting EPUB, MOBI, PDF, and more through natural language queries.

An MCP server that provides utility tools for markdown processing, including ADF-to-markdown conversion, table formatting, and table of contents management.

Provides five safe tools (calc, search, model_drift, compare_runs, grade_answer) for arithmetic, keyword search, model drift monitoring, eval comparison, and answer grading against sources, all implemented directly from the MCP spec with zero dependencies.

Read-only MySQL MCP server that lets AI agents list tables, describe schemas, and run SELECT/SHOW/EXPLAIN queries with a row cap, bound to a single database for safety.

An MCP server that provides a persistent sandbox for AI coding agents to explore codebases server-side, returning only compact summaries to reduce context consumption.

Unofficial Powershell MCP server

Provides AI assistants with specialized tools to interact with NIST's Open Security Controls Assessment Language (OSCAL) framework. It enables agents to retrieve schemas, explore models, and generate valid OSCAL documentation for security compliance automation.

Provides aerodynamic analysis tools through MCP, enabling geometry generation, meshing, CFD solving, and visualization for 2D airfoils.

Provides a local MCP server for AI-powered web crawling on Windows, enabling agents to directly crawl and extract web content without requiring WSL.

Enables Large Language Models to access and manipulate Autodesk Revit models through a pyRevit-based bridge and the Model Context Protocol.

A production-ready MCP server that connects AI assistants to the D-Tools System Integrator platform, enabling natural language management of AV projects, clients, catalogs, tasks, service orders, and purchase orders.

Provides MSP support tools (ticket search, draft response, KB search, update) with a deterministic security guardrail that refuses to draft responses for security tickets based on content scanning, even if mislabeled.

MCP server for jar.tools' JAR security scanner. Enables AI agents to scan local .jar, .zip, or .class files for supply-chain risk without opening a browser.

An Operit-compatible adapter of the Exa MCP server, enabling web search, code search, and company research capabilities in AI assistants. It fixes MCP handshake compatibility issues, allowing tools like web_search_exa and web_fetch_exa to load and run reliably.

Provides agents with real Linux VMs to run commands, manage files, expose ports, and track costs, all through an ephemeral sandbox service.

An MCP server that exposes 43 domain tools behind 4 meta-tools, applying guardrails such as budgets, rate limits, schema validation, human-in-the-loop confirmation for mutations, PII redaction, and an append-only audit log while reducing context window usage.