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Knowledge Graph Memory Server

Knowledge Graph Memory Server

by yodakeisuke

forked https://github.com/modelcontextprotocol/servers/tree/main

Knowledge Graph Memory Server

A basic implementation of persistent memory using a local knowledge graph. This lets Claude remember information about the user across chats.

Core Concepts

Entities

Entities are the primary nodes in the knowledge graph. Each entity has:

  • A unique name (identifier)

  • An entity type (e.g., "person", "organization", "event")

  • A list of observations

Example:

{
  "name": "John_Smith",
  "entityType": "person",
  "observations": ["Speaks fluent Spanish"]
}

Relations

Relations define directed connections between entities. They are always stored in active voice and describe how entities interact or relate to each other.

Example:

{
  "from": "John_Smith",
  "to": "Anthropic",
  "relationType": "works_at"
}

Observations

Observations are discrete pieces of information about an entity. They are:

  • Stored as strings

  • Attached to specific entities

  • Can be added or removed independently

  • Should be atomic (one fact per observation)

Example:

{
  "entityName": "John_Smith",
  "observations": [
    "Speaks fluent Spanish",
    "Graduated in 2019",
    "Prefers morning meetings"
  ]
}

Related MCP server: Graph-Mem MCP

API

Tools

  • create_entities

    • Create multiple new entities in the knowledge graph

    • Input: entities (array of objects)

      • Each object contains:

        • name (string): Entity identifier

        • entityType (string): Type classification

        • observations (string[]): Associated observations

    • Ignores entities with existing names

  • create_relations

    • Create multiple new relations between entities

    • Input: relations (array of objects)

      • Each object contains:

        • from (string): Source entity name

        • to (string): Target entity name

        • relationType (string): Relationship type in active voice

    • Skips duplicate relations

  • add_observations

    • Add new observations to existing entities

    • Input: observations (array of objects)

      • Each object contains:

        • entityName (string): Target entity

        • contents (string[]): New observations to add

    • Returns added observations per entity

    • Fails if entity doesn't exist

  • delete_entities

    • Remove entities and their relations

    • Input: entityNames (string[])

    • Cascading deletion of associated relations

    • Silent operation if entity doesn't exist

  • delete_observations

    • Remove specific observations from entities

    • Input: deletions (array of objects)

      • Each object contains:

        • entityName (string): Target entity

        • observations (string[]): Observations to remove

    • Silent operation if observation doesn't exist

  • delete_relations

    • Remove specific relations from the graph

    • Input: relations (array of objects)

      • Each object contains:

        • from (string): Source entity name

        • to (string): Target entity name

        • relationType (string): Relationship type

    • Silent operation if relation doesn't exist

  • read_graph

    • Read the entire knowledge graph

    • No input required

    • Returns complete graph structure with all entities and relations

  • search_nodes

    • Search for nodes based on one or more keywords

    • Input: query (string)

      • Space-separated keywords (e.g., "budget utility")

      • Multiple keywords are treated as OR conditions

    • Searches across:

      • Entity names

      • Entity types

      • Subdomains

      • Observation content

    • Matching behavior:

      • Case-insensitive

      • Partial word matching

      • Any keyword can match any field

      • Returns entities matching ANY of the keywords

    • Returns matching entities and their relations

    • Example queries:

      • Single keyword: "budget"

      • Multiple keywords: "budget utility"

      • With special chars: "budget & utility"

  • open_nodes

    • Retrieve specific nodes by name

    • Input: names (string[])

    • Returns:

      • Requested entities

      • Relations between requested entities

    • Silently skips non-existent nodes

Usage with Claude Desktop

Setup

Add this to your claude_desktop_config.json:

Docker

{
  "mcpServers": {
    "memory": {
      "command": "docker",
      "args": ["run", "-i", "--rm", "mcp/memory"]
    }
  }
}

NPX

{
  "mcpServers": {
    "memory": {
      "command": "npx",
      "args": [
        "-y",
        "@modelcontextprotocol/server-memory"
      ]
    }
  }
}

NPX with custom setting

The server can be configured using the following environment variables:

{
  "mcpServers": {
    "memory": {
      "command": "npx",
      "args": [
        "-y",
        "@modelcontextprotocol/server-memory"
      ],
      "env": {
        "MEMORY_FILE_PATH": "/path/to/custom/memory.json"
      }
    }
  }
}
  • MEMORY_FILE_PATH: Path to the memory storage JSON file (default: memory.json in the server directory)

System Prompt

The prompt for utilizing memory depends on the use case. Changing the prompt will help the model determine the frequency and types of memories created.

Here is an example prompt for chat personalization. You could use this prompt in the "Custom Instructions" field of a Claude.ai Project.

Follow these steps for each interaction:

1. User Identification:
   - You should assume that you are interacting with default_user
   - If you have not identified default_user, proactively try to do so.

2. Memory Retrieval:
   - Always begin your chat by saying only "Remembering..." and retrieve all relevant information from your knowledge graph
   - Always refer to your knowledge graph as your "memory"
   - When searching your memory, you can use multiple keywords to find related information
   - Example searches:
     * Single concept: "programming"
     * Related concepts: "programming python"
     * Specific domain with role: "work engineer"

3. Memory Creation:
   - While conversing with the user, be attentive to any new information that falls into these categories:
     a) Basic Identity (age, gender, location, job title, education level, etc.)
     b) Behaviors (interests, habits, etc.)
     c) Preferences (communication style, preferred language, etc.)
     d) Goals (goals, targets, aspirations, etc.)
     e) Relationships (personal and professional relationships up to 3 degrees of separation)
   - When storing information, use specific and descriptive keywords that will help in future searches

4. Memory Update:
   - If any new information was gathered during the interaction, update your memory as follows:
     a) Create entities for recurring organizations, people, and significant events
     b) Connect them to the current entities using relations
     c) Store facts about them as observations
     d) Use clear and searchable terms in entity names and observations to facilitate future retrieval

Building

Docker:

docker build -t mcp/memory -f src/memory/Dockerfile . 

License

This MCP server is licensed under the MIT License. This means you are free to use, modify, and distribute the software, subject to the terms and conditions of the MIT License. For more details, please see the LICENSE file in the project repository.

Available Tools

9 tools
add_observationsB

Add new observations to existing entities in the knowledge graph

Inputs: observations (required).

create_entitiesC

Create multiple new entities in the knowledge graph

Inputs: entities (required).

create_relationsB

Create multiple new relations between entities in the knowledge graph. Relations should be in active voice

Inputs: relations (required).

delete_entitiesA

Delete multiple entities and their associated relations from the knowledge graph

Inputs: entityNames (required).

delete_observationsB

Delete specific observations from entities in the knowledge graph

Inputs: deletions (required).

delete_relationsA

Delete multiple relations from the knowledge graph

Inputs: relations (required).

open_nodesA

Open specific nodes in the knowledge graph by their names. Returns the complete node information including subdomain and all metadata.

Inputs: names (required).

read_graphB

Read the entire knowledge graph

Inputs: no named parameters.

search_nodesA

Search for nodes in the knowledge graph based on one or more keywords. The search covers entity names, types, subdomains, and observation content. Multiple keywords are treated as OR conditions, where any keyword must match somewhere in the entity's fields.

Inputs: query (required).

Tool Schema Changelog

Recent tool additions, removals, and schema changes observed during successful MCP inspections.

Loading tool schema changelog…

    TDQS

    A3.5/5.0

    Scored across 9 tools

    Disambiguation5/5

    Each tool has a clearly distinct purpose with no ambiguity: create/delete operations target specific components (entities, relations, observations), while read/search/open handle different access patterns. The descriptions reinforce these distinctions, making misselection unlikely.

    Naming Consistency5/5

    All tools follow a consistent verb_noun pattern with snake_case throughout (e.g., add_observations, delete_relations, search_nodes). The naming is predictable and readable, with no deviations in style or convention.

    Tool Count5/5

    With 9 tools, the server is well-scoped for a knowledge graph memory system. Each tool earns its place by covering essential CRUD operations and access methods, avoiding both bloat and insufficiency for the domain.

    Completeness4/5

    The toolset provides strong coverage for core knowledge graph operations, including creation, deletion, reading, and searching. A minor gap exists in update capabilities for entities or observations, which agents might need to work around by deleting and recreating, but overall workflows are well-supported.

    Maintenance

    ActivityInactive
    ResponsivenessNo recent community issues

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