DataMineAna
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Here is a step-by-step guide with screenshots.
DataMineAna
Mathematical modeling MCP toolkit -- provides data preprocessing, data analysis, mathematical modeling, and data visualization capabilities for LLMs/Agents.
Architecture
+-----------------------------------------------+
| Modeling Skill (上层) |
+-----------------------------------------------+
| MCP Client (中层) |
| - 与大模型交互 |
| - 智能文档传递(先常用,再全量) |
| - 工具调用解析与转发 |
+-----------------------------------------------+
| MCP Server (底层) |
| - 工具注册与分发(37 个工具) |
| - 数据预处理(38 个方法) |
| - 数据分析(29 个方法) |
| - 数学建模(47 个方法) |
| - 数据可视化(10 种图表) |
| - 高级扩展(动态方法创建) |
| - 数据档案追踪(核心) |
| - 缓存管理 |
+-----------------------------------------------+
| UI Module (可选) |
| - 交互式数据建模工作台 |
| - 逐步向导:加载->预处理->分析->可视化->建模->报告 |
| - Gradio Web UI |
| - 基于 MCP Server(非直接调用) |
+-----------------------------------------------+Related MCP server: eda-mcp
Core Features
Plugin-based Method Architecture
Each method class inherits BaseMethod and is loaded and executed via MethodLoader. Method classes are not exposed externally; they are accessed only through the Interface.
module/
methods/ # 方法类(隐藏)
cleaning.py # 相关方法分组
transformation.py
loader.py # MethodLoader 子类(注册所有方法)
interface.py # 公开接口(集成 tracker)Data Profile Tracking System (Core)
Automatically records input/output information before and after each function call
Maintains a global data profile (shape, columns, types, missing values, statistics, column details)
Tracks the entire process from data loading to the end of modeling
get_pipeline_reportgenerates a complete record of call steps (for writing papers)
Smart Documentation Delivery
Initial delivery: MCP_USAGE.md + COMMON_API.md (20 common tools)
On-demand delivery: FULL_API.md (37 tools + 114 methods)
return_mode Controls Return Content
Each tool supports the return_mode parameter to control the returned content:
summary(default),full,data,head,tail,sample,path
Dynamic Method Extension
Advanced extension: pass a Python code string to
create_methodto dynamically create new methodsExternal extension: place method class files in
src/advanced/methods/orcache/advanced/, and they are loaded automaticallyUI customization: UI users can also write custom methods in the interface
Data Visualization
10 chart types: distribution plots, box plots, scatter plots, heatmaps, confusion matrices, ROC curves, etc.
Supports before/after comparison (before vs. after processing)
Images are automatically saved to
cache/plotting/
Directory Structure
DataMineAna/
src/
common/ # 公共函数库
base_method.py # 方法基类(ParameterDef 支持 UI 自动表单)
method_loader.py # 方法加载器
types.py # 类型定义
validators.py # 参数校验
json_utils.py # JSON 工具
tracker/ # 数据档案与追踪系统(核心)
data_profile.py # 数据档案
profile_manager.py # 档案管理器
call_tracker.py # 调用追踪器
cache_manager/ # 缓存管理
preprocessing/ # 数据预处理(38 个方法)
analysis/ # 数据分析(29 个方法)
modeling/ # 数学建模(47 个方法)
plotting/ # 数据可视化(10 种图表)
plotter.py # 核心绘图引擎
interface.py # 可视化接口
advanced/ # 高级扩展
loader.py # 动态方法加载器
template.py # 扩展模板
methods/ # 内置扩展方法
mcp_server/ # MCP Server(底层接口)
mcp_client/ # MCP Client(中层)
ui/ # 交互式 UI 模块
app.py # Gradio 主应用
state.py # 会话状态(基于 MCP Server)
pages/
page_load.py # 1. 数据加载
page_preprocess.py # 2. 数据预处理
page_analysis.py # 3. 数据分析
page_plot.py # 4. 数据可视化
page_model.py # 5. 模型构建
page_report.py # 6. 流水线报告
components.py # 共享 UI 组件
cache/ # 临时文件目录
preprocessing/ # 预处理临时文件
analysis/ # 分析临时文件
modeling/ # 建模临时文件
plotting/ # 图表临时文件
advanced/ # 动态方法文件
tracker/ # 追踪临时文件
ui/ # UI 临时文件
docs/ # 文档
test.py # 集成测试(20 个测试)
run_ui.py # UI 启动入口Quick Start
MCP Server (for Agent Use)
from src.mcp_server import MCPServer
server = MCPServer()
# 加载数据
r = server.call_tool("load_data", path="data.csv")
# 数据清洗
r = server.call_tool("clean_data", dataset_id="ds_xxx", missing_strategy="mean")
# 数据可视化
r = server.call_tool("plot_distribution", dataset_id="ds_xxx")
r = server.call_tool("plot_box", dataset_id="ds_xxx")
# 建模
r = server.call_tool("regression", dataset_id="ds_xxx", target_column="y")
# 获取完整报告
r = server.call_tool("get_pipeline_report")Interactive UI (for Human Use)
python run_ui.py # 默认端口 7860
python run_ui.py --port 8080 # 自定义端口
python run_ui.py --no-open # 不自动打开浏览器UI workflow:
Load Data - Upload a data file
Preprocess - Clean, transform, reduce dimensions, split
Analyze - Descriptive statistics, correlation, distribution, hypothesis testing
Visualize - Distribution plots, box plots, scatter plots, heatmaps, before/after comparison
Model - Regression/classification/clustering/cross-validation/grid search
Report - Generate a complete pipeline report
Method Count Statistics
Module | Methods | Tools |
Data Preprocessing | 38 | 9 |
Data Analysis | 29 | 6 |
Mathematical Modeling | 47 | 8 |
Data Visualization | 10 | 6 |
Advanced Extension | Dynamic | 2 |
System Tools | - | 6 |
Total | 124+ | 37 |
Extension Methods
Method 1: Inherit BaseMethod
from src.common.base_method import BaseMethod, MethodResult, ParameterDef
class MyMethod(BaseMethod):
@property
def name(self): return "my_method"
@property
def description(self): return "My custom method"
@property
def category(self): return "custom"
@property
def parameters(self):
return [
ParameterDef(name="threshold", type="float", default=0.5, description="Threshold value"),
]
def execute(self, df, **kwargs):
threshold = kwargs.get("threshold", 0.5)
# your logic here
return MethodResult(df=df, success=True, message="done")Method 2: Dynamic Creation (via MCP)
server.call_tool("create_method", code='''
class MyMethod(BaseMethod):
@property
def name(self): return "my_method"
@property
def description(self): return "My custom method"
def execute(self, df, **kwargs):
return MethodResult(df=df, success=True, message="done")
''', module="preprocessing")Method 3: Add to the Advanced Extension Directory
Place method files in src/advanced/methods/ (persistent) or cache/advanced/ (temporary), and they are loaded automatically.
Dependencies
Python >= 3.10
pandas >= 2.0
numpy >= 1.24
scikit-learn >= 1.3
scipy >= 1.11
matplotlib >= 3.7
seaborn >= 0.12
gradio >= 4.0 (UI module)
License
MIT License
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