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gbif_species_search

Read-onlyIdempotent

Search species by name in the GBIF taxonomic backbone. Filter by rank, status, habitat, or threat level to find specific taxa.

Instructions

Search for species in the GBIF taxonomic backbone. Supports filtering by rank, status, habitat, threat level, and more.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
qNoSimple full text search parameter. The value for this parameter can be a simple word or a phrase. Wildcards are not supported.
hlNoSet hl=true to highlight terms matching the query in fulltext search fields. The highlight will be an emphasis tag of class "gbifHl".
rankNoFilters by taxonomic rank. See https://api.gbif.org/v1/enumeration/basic/Rank for full list. Common values: KINGDOM, PHYLUM, CLASS, ORDER, FAMILY, GENUS, SPECIES, SUBSPECIES.
facetNoA facet name used to retrieve the most frequent values for a field. This parameter may be repeated to request multiple facets. Example: ["rank", "status", "habitat"] to get counts by rank, status, and habitat.
issueNoA specific indexing issue. Values include: BACKBONE_MATCH_NONE, BACKBONE_MATCH_FUZZY, RANK_INVALID, SCIENTIFIC_NAME_ASSEMBLED, CLASSIFICATION_NOT_APPLIED, etc. See https://api.gbif.org/v1/enumeration/basic/NameUsageIssue for full list.
limitNoControls the number of results in the page. Using too high a value will be overwritten with the default maximum threshold. Sensible defaults are used so this may be omitted. Maximum: 1000.
offsetNoDetermines the offset for the search results. A limit of 20 and offset of 40 will get the third page of 20 results. Some services have a maximum offset.
statusNoFilters by the taxonomic status. Values: ACCEPTED (valid taxon name), DOUBTFUL (uncertain status), SYNONYM (alternative name), HETEROTYPIC_SYNONYM (different type specimens), HOMOTYPIC_SYNONYM (same type specimen). See https://api.gbif.org/v1/enumeration/basic/TaxonomicStatus
threatNoFilters by IUCN threat status. Values: EX (Extinct), EW (Extinct in Wild), CR (Critically Endangered), EN (Endangered), VU (Vulnerable), NT (Near Threatened), LC (Least Concern), DD (Data Deficient), NE (Not Evaluated). See https://api.gbif.org/v1/enumeration/basic/ThreatStatus
habitatNoFilters by the habitat. Currently only 3 major biomes are accepted: MARINE (ocean/sea habitats), FRESHWATER (rivers/lakes), TERRESTRIAL (land habitats). See https://api.gbif.org/v1/enumeration/basic/Habitat
nameTypeNoFilters by name type. Values: SCIENTIFIC (proper scientific names), VIRUS (virus names), HYBRID (hybrid names), INFORMAL (informal names), CULTIVAR (cultivated varieties), CANDIDATUS (proposed bacterial names), DOUBTFUL (uncertain names), PLACEHOLDER (temporary names), NO_NAME (unnamed taxa). See https://api.gbif.org/v1/enumeration/basic/NameType
isExtinctNoFilters by extinction status. Set to true to find only extinct species, false for extant species only.
datasetKeyNoA UUID of a checklist dataset. Example: "d7dddbf4-2cf0-4f39-9b2a-bb099caae36c" (GBIF Backbone Taxonomy). Can be repeated to query multiple datasets.
facetMincountNoUsed in combination with the facet parameter. Set facetMincount={#} to exclude facets with a count less than {#}. Example: facetMincount=10 to only show facet values appearing 10+ times.
higherTaxonKeyNoFilters by any of the higher Linnean rank keys. Note this is within the respective checklist and not searching NUB keys across all checklists. Example: 212 (for family Felidae).
facetMultiselectNoUsed in combination with the facet parameter. Set facetMultiselect=true to still return counts for values that are not currently filtered. Useful for multi-select faceted search interfaces.
nomenclaturalStatusNoFilters by nomenclatural status. Values include: LEGITIMATE, VALIDLY_PUBLISHED, NEW_COMBINATION, REPLACEMENT, CONSERVED, REJECTED, INVALID, etc. See https://api.gbif.org/v1/enumeration/basic/NomenclaturalStatus for complete list.

Schema Changelog

Changes observed during successful MCP inspections.

  1. First observedv1.1.0

TDQS

B3.2/5.0
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, idempotentHint=true, openWorldHint=true and destructiveHint=false, so the safety profile is fully covered. The description adds essentially nothing beyond that – no note on pagination behavior, result volume, or performance – so it sits at the minimum viable level given rich annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, front-loaded with the core action, with no repetition. The trailing 'and more' is mild filler that could have been replaced with a routing hint, keeping it short of a 5.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a 17-parameter, zero-required search tool with no output schema, the description is thin: it doesn't describe the result shape, pagination expectations, or how the large optional filter set is meant to be combined. Annotations and schema carry most of the load, but an agent still lacks selection context versus sibling species tools.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100% and every one of the 17 parameters carries its own description with enum values and examples. The phrase 'rank, status, habitat, threat level, and more' just echoes a subset of the schema, adding no new meaning, so the baseline 3 applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

States a specific verb (Search) and resource (species in the GBIF taxonomic backbone), which is clear on its own. However, it does nothing to distinguish itself from close siblings like gbif_species_suggest or gbif_species_match, which also take name-like queries, so an agent must infer the boundary.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description lists filter categories but gives no when-to-use guidance and no exclusions relative to the many sibling species tools. It never says when to prefer this over gbif_species_suggest (autocomplete) or gbif_species_match (name resolution), which is the main routing decision an agent faces.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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