pip install -e .
python reproduce_tables.py

pip install -e .

export PTII=/path/to/ptII          # Ptolemy II installation root
export JAVA_HOME=/path/to/java     # JRE 11+

python demos/mcp_stdio_smoke.py

ptolemy_mcp/          MCP server and Ptolemy II bridge (Python package)
eval/
  benchmarks/         Task specifications for Benchmark A and C
  results/per_run/    Pre-collected per-run trace JSON files (1 260 runs)
  aggregate_*.py      Aggregation scripts that produce the paper's tables
  runner.py           Evaluation harness entry point
eval_eda/             Verilog/RTL cross-environment evaluation (54 runs)
eval_systemc/         SystemC cross-environment evaluation (27 runs)
eval_simulink/        Simulink cross-environment evaluation (18 runs)
agent/                System prompt and case-study notes used during evaluation
demos/                End-to-end smoke demo and reference MoML models
examples/             Example MCP client configuration
scripts/              Helper scripts for running sweeps
reproduce_tables.py   Code Ocean entry point — regenerates all tables