A
licenseB
qualityB
maintenanceEnables searching and downloading Gene Expression Omnibus (GEO) data from NCBI, including datasets, series, samples, platforms, and profiles, through natural language queries.
Last updated
11
9
BSD 3-Clause
Why this server?
Directly enables searching and downloading GEO datasets, series, samples, platforms, and profiles via natural language queries.
Why this server?
Unified retrieval tool for ENCODE, ChIP-Atlas, ReMap, GEO, and SRA/ENA with unified metadata and direct FASTQ download.
Alicense-qualityCmaintenanceUnified genomic track, peak, and sequence retrieval tool for ENCODE, ChIP-Atlas, ReMap, GEO, and SRA/ENA with unified metadata, resolved DOI/PMID provenance, and direct FASTQ download without SRA toolkit.Last updatedMITWhy this server?
Aggregates datasets from Zenodo, DataCite, NCBI omics archives (including GEO/SRA/BioProject), and literature, deduplicating by DOI.
AlicenseAqualityAmaintenanceSearches and fetches research datasets across Zenodo, DataCite (Dryad/Figshare/Dataverse/OSF), NCBI omics archives (GEO/SRA/BioProject), and the literature (PubMed/OpenAIRE) through one normalized model — deduplicating by DOI, expanding organism queries with NCBI Taxonomy synonyms, and bridging papers to the datasets they produced. Resolves citations and open-access full text, and downloads files.Last updated62MITWhy this server?
Provides access to NCBI Datasets API for genomic, taxonomic, and biological data, which includes GEO-related data.
Flicense-qualityDmaintenanceProvides comprehensive access to the NCBI Datasets API, enabling genomic, taxonomic, and biological data operations through 31 specialized tools.Last updated16Why this server?
Accesses NCBI's E-utilities, PubChem, and PMC APIs, enabling searches of GEO and other biomedical databases.
Flicense-qualityDmaintenanceProvides access to NCBI's E-utilities, PubChem, and PMC APIs for searching and retrieving biomedical literature, chemical, and genomic data.Last updatedWhy this server?
Similar to Entrez MCP, provides access to NCBI's E-utilities for searching GEO and other biomedical resources.
Flicense-quality-maintenanceProvides access to NCBI's scientific databases including E-utilities, PubChem, and PMC APIs for biomedical literature search, molecular data retrieval, and research through natural language queries.Last updated3Why this server?
Another MCP server for NCBI Datasets v2, supports searching genome assembly metadata and downloading data packages, including GEO.
FlicenseAqualityAmaintenanceAn MCP server that gives Claude access to NCBI Datasets v2 — search genome assembly metadata, retrieve taxonomy records, and download data packages without leaving your conversation.Last updated10Why this server?
Integrates 50+ biomedical data sources including genes, proteins, and clinical data, likely covering GEO datasets.
Alicense-qualityAmaintenanceA unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.Last updated19AGPL 3.0Why this server?
Accesses PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info for biomedical literature, though not directly GEO.
AlicenseAqualityAmaintenanceProvides LLMs with structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info through the Model Context Protocol.Last updated35547MIT