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A server for finding biological models or resources

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  • Why this server?

    This server provides access to PubMed for biomedical and life sciences literature, enabling AI to search for and retrieve relevant information.

    PubTator-MCP-Server

    JackKuo666
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    security
    A
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    quality
    🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.
    Last updated -
    Python
    MIT License
    • Linux
    • Apple

  • Why this server?

    This server allows searching for biomedical and life sciences literature in PubMed.

    MCP PubMed Search

    wavelovey
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    security
    A
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    Server to search PubMed (PubMed is a free, online database that allows users to search for biomedical and life sciences literature). I have created on a day MCP came out but was on vacation, I saw someone post similar server in your DB, but figured to post mine.
    Last updated -
    1
    1
    Python
    MIT License
    • Apple

  • Why this server?

    Provides structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info, fitting the 'bio models' query.

    BioMCPofficial

    genomoncology
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    security
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    Provides LLMs with structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info through the Model Context Protocol.
    Last updated -
    100
    Python
    MIT License
    • Apple
    • Linux

  • Why this server?

    Provides AI assistants access to protein information directly from UniProt, fitting the bio models query.

    UniProt MCP Server

    TakumiY235
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    security
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    license
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    Enables AI assistants to access protein information directly from UniProt, allowing retrieval of protein names, functions, sequences, and organism data by accession number.
    Last updated -
    2
    1
    Python
    MIT License
    • Apple
    • Linux

  • Why this server?

    Aids in single-cell RNA sequencing analysis, which is used to create models of biological processes.

    SCMCP

    huang-sh
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    security
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    An MCP server that enables single-cell RNA sequencing analysis through natural language, supporting data processing, visualization, and analysis tasks without requiring coding knowledge.
    Last updated -
    54
    3
    Python
    BSD 3-Clause

  • Why this server?

    Connects 3D Slicer with AI assistants through the Model Context Protocol, enabling medical image processing which could be seen as bio models and scene manipulation using natural language.

    MCP-Slicer

    zhaoyouj
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    security
    F
    license
    A
    quality
    Connects 3D Slicer with AI assistants through the Model Context Protocol, enabling medical image processing and scene manipulation using natural language.
    Last updated -
    2
    5
    Python
    • Apple

  • Why this server?

    Provides access to channel data and metadata for well logging data, which may be relevant to creating models in the Oil and Gas industry.

    mcp-server-dlis

    houtj
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    security
    A
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    quality
    A Model Context Protocol server that provides DLIS (Digital Log Interchange Standard) file analysis capabilities. This server enables LLMs to extract information from DLIS files, including channel data and metadata, with support for hierarchical data structures.
    Last updated -
    Python
    MIT License

  • Why this server?

    Analyzes bird detection data, which may be of interest to users interested in biological models.

    BirdNet-Pi MCP Server

    DMontgomery40
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    security
    F
    license
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    quality
    A Python-based server that enables accessing and analyzing bird detection data through the Model Context Protocol, offering features like filtering detections, accessing audio recordings, and generating reports.
    Last updated -
    3
    Python
    • Linux
    • Apple

  • Why this server?

    May provide the means to create mathematical expressions of biological models.

    Math Expression MCP Server

    eriktilio
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    security
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    A tool server that processes mathematical expressions via Multi-Chain Protocol (MCP), allowing LLMs to solve math problems through tool integration.
    Last updated -
    Python
    MIT License

  • Why this server?

    Provides a standardized interface for working with SAM/BAM/CRAM files, useful for interacting with genomic data.

    samtools_mcp

    sirusb
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    security
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    A Model Control Protocol implementation for SAMtools, providing a standardized interface for working with SAM/BAM/CRAM files.
    Last updated -
    Python