A server for finding biological models or resources

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A server for finding biological models or resources

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Why this server?
This server provides access to PubMed for biomedical and life sciences literature, enabling AI to search for and retrieve relevant information.
PubTator-MCP-Server
JackKuo666
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security
A
license
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quality
🔍 A biomedical literature annotation and relationship mining server based on PubTator3, providing convenient access through the MCP interface.
Last updated -
Python
MIT License
Why this server?
This server allows searching for biomedical and life sciences literature in PubMed.
MCP PubMed Search
wavelovey
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security
A
license
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quality
Server to search PubMed (PubMed is a free, online database that allows users to search for biomedical and life sciences literature). I have created on a day MCP came out but was on vacation, I saw someone post similar server in your DB, but figured to post mine.
Last updated -
1
1
Python
MIT License
Why this server?
Provides structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info, fitting the 'bio models' query.
BioMCP
genomoncology
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security
A
license
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quality
Provides LLMs with structured access to critical biomedical databases including PubTator3 (PubMed/PMC), ClinicalTrials.gov, and MyVariant.info through the Model Context Protocol.
Last updated -
131
Python
MIT License
Why this server?
Provides AI assistants access to protein information directly from UniProt, fitting the bio models query.
UniProt MCP Server
TakumiY235
A
security
A
license
A
quality
Enables AI assistants to access protein information directly from UniProt, allowing retrieval of protein names, functions, sequences, and organism data by accession number.
Last updated -
2
1
Python
MIT License
Why this server?
Aids in single-cell RNA sequencing analysis, which is used to create models of biological processes.
SCMCP
huang-sh
A
security
A
license
A
quality
An MCP server that enables single-cell RNA sequencing analysis through natural language, supporting data processing, visualization, and analysis tasks without requiring coding knowledge.
Last updated -
54
7
Python
BSD 3-Clause
Why this server?
Connects 3D Slicer with AI assistants through the Model Context Protocol, enabling medical image processing which could be seen as bio models and scene manipulation using natural language.
MCP-Slicer
zhaoyouj
A
security
F
license
A
quality
Connects 3D Slicer with AI assistants through the Model Context Protocol, enabling medical image processing and scene manipulation using natural language.
Last updated -
2
5
Python
Why this server?
Provides access to channel data and metadata for well logging data, which may be relevant to creating models in the Oil and Gas industry.
mcp-server-dlis
houtj
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security
A
license
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quality
A Model Context Protocol server that provides DLIS (Digital Log Interchange Standard) file analysis capabilities. This server enables LLMs to extract information from DLIS files, including channel data and metadata, with support for hierarchical data structures.
Last updated -
Python
MIT License
Why this server?
Analyzes bird detection data, which may be of interest to users interested in biological models.
BirdNet-Pi MCP Server
DMontgomery40
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security
F
license
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quality
A Python-based server that enables accessing and analyzing bird detection data through the Model Context Protocol, offering features like filtering detections, accessing audio recordings, and generating reports.
Last updated -
3
Python
Why this server?
May provide the means to create mathematical expressions of biological models.
Math Expression MCP Server
eriktilio
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security
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license
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quality
A tool server that processes mathematical expressions via Multi-Chain Protocol (MCP), allowing LLMs to solve math problems through tool integration.
Last updated -
Python
MIT License
Why this server?
Provides a standardized interface for working with SAM/BAM/CRAM files, useful for interacting with genomic data.
samtools_mcp
sirusb
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security
F
license
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quality
A Model Control Protocol implementation for SAMtools, providing a standardized interface for working with SAM/BAM/CRAM files.
Last updated -
Python