fhir-patient-consent-mcp-server

An MCP server that lets a model ask questions about a patient, their insulin pump, and who's consented to see that data - all sourced live from a FHIR (R4) store. No data lives in this server; every answer is a real-time FHIR REST query.

It's a companion to fhir-consent-service (a Spring Boot API for writing Patient/Device/Consent to FHIR), but has no code dependency on it - this server only depends on the FHIR wire format, so it works against any FHIR R4 endpoint.

Tools

Related MCP server: FHIR MCP Server

Resource

fhir-chart://{patientId} - a consolidated JSON "chart" (demographics + devices + active consents) for a patient, meant to be attached directly into context by a host application rather than assembled by the model across several tool calls. See docs/architecture.md for why this is a resource rather than a sixth tool.

Setup

npm install
npm run build

Point it at a FHIR server

export FHIR_BASE_URL=http://localhost:8081/fhir   # default shown
export FHIR_AUTH_TOKEN=...                         # optional bearer token

The easiest way to get data to query: run fhir-consent-service's docker compose up -d (starts a local HAPI FHIR JPA server on :8081) and create a patient, device, and consent through its REST API, then query the same store here.

Run it directly (for testing with stdio)

npm run dev

Register it with an MCP client

For Claude Desktop / Claude Code, add to your MCP config:

{
  "mcpServers": {
    "fhir-patient-consent": {
      "command": "node",
      "args": ["/absolute/path/to/fhir-patient-consent-mcp-server/dist/index.js"],
      "env": {
        "FHIR_BASE_URL": "http://localhost:8081/fhir"
      }
    }
  }
}

Run npm run build first so dist/index.js exists.

Example questions once connected

• "Look up the patient with MRN MRN-778001."

• "What insulin pump does patient 123 have, and what's its serial number?"

• "Has GlucoVue Remote Monitoring been given consent to see patient 123's device data?"

• "Show me patient 123's full chart." (exercises the fhir-chart:// resource)

Testing

npm test

Unit tests cover the mapper layer (src/mappers/*.ts), including the consent-authorization logic in isConsentActiveForPartner - specifically its handling of revoked consents, not-yet-started/expired periods, and open-ended (end absent) periods, since those are the cases most likely to be gotten subtly wrong.

There's no integration test against a live FHIR server in this repo (unlike fhir-consent-service, which uses Testcontainers) because this server has no write path to seed data with - it would need to depend on that repo (or duplicate its resource-creation logic) purely to set up test fixtures. If this repository grows a seeding script, add one then.

Note: written in a sandboxed environment without npm registry access, so npm install / npm run build / npm test have not actually been executed here. The code targets @modelcontextprotocol/sdk@^1.12; if the SDK's server.tool(...) / server.resource(...) signatures have moved to registerTool/registerResource by the version you install, the fix is mechanical - check the SDK's own README/CHANGELOG.

Project layout

src/
├── index.ts              Server entry point, registers all tools/resources
├── fhirClient.ts          Thin fetch-based FHIR REST client
├── tools/                 One file per MCP tool
├── resources/             One file per MCP resource
├── mappers/                FHIR JSON -> summary objects + consent auth logic
└── util/results.ts        Shared tool-result formatting helpers

Security note

This server performs no PHI redaction and passes through whatever the FHIR server returns. If deploying against real patient data, put access control in front of the FHIR server itself (this server forwards FHIR_AUTH_TOKEN as a bearer token, but does not manage token acquisition/refresh) and consider what should and shouldn't be exposed to an MCP client at all.

License

MIT