Create a new LinkML editing workspace backed by a bare git repository. Returns workspace_id and initial_commit. If files are omitted, creates a minimal schema.yaml.

Read a LinkML YAML schema file from a specific workspace commit. Use path to read schema.yaml or another local imported YAML file.

List files present in a LinkML workspace at a specific commit. Use this before targeting imported local schema files.

Fetch one LinkML entity from a schema file at a specific commit. entity_type must be class, slot, enum, prefix, or import.

Validate a LinkML YAML schema at a specific workspace commit. This performs schema validation only and does not create a commit.

Apply an atomic ordered semantic changeset to a LinkML workspace. Requires base_commit; validates before and after edits; returns a new commit id. Supported operations include create/delete/rename class, slot, enum, prefix, import, file, plus set_field, unset_field, list_append, list_remove, list_replace, map_set, and map_remove.

List the LinkML generators supported by this MCP server. Milestone generators are shacl, owl, and doc.

Describe one supported LinkML generator and the option format accepted by run_generator. Generator options are passed as CLI-style option names without leading dashes.

Run a supported LinkML generator against a schema file at a specific commit. Does not validate automatically and does not commit generated artifacts. Returns inline content for small outputs or a temporary path for large/multi-file outputs.