hpc_generate_rmd_render_job
Generate an sbatch script to render an R Markdown file on a SLURM compute node, using the Rmd path and output directory.
Instructions
Generate an sbatch script that renders an R Markdown file on a compute node.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| cpus | No | ||
| No | |||
| rmd_path | Yes | Absolute path on the cluster | |
| walltime | No | 04:00:00 | |
| memory_gb | No | ||
| partition | No | Partition (default: cluster default) | |
| output_dir | Yes |