Atlassian MCP Server

A custom Model Context Protocol (MCP) server that provides integration with your enterprise Jira and Confluence instances.

Features

Jira Tools

• jira_search_issues - Search issues using JQL

• jira_get_issue - Get detailed information about a specific issue

• jira_create_issue - Create new issues

• jira_update_issue - Update existing issues (summary, description, status)

• jira_add_comment - Add comments to issues

Confluence Tools

• confluence_search - Search pages using CQL

• confluence_get_page - Get page content by ID or title

• confluence_create_page - Create new pages

• confluence_update_page - Update existing pages

Related MCP server: AI-Powered Jira MCP Server

Prerequisites

• Node.js v18 or higher

• An Atlassian Cloud account with access to Jira and/or Confluence

• API token for authentication

Setup Instructions

Step 1: Install Dependencies

Navigate to the server directory and install dependencies:

cd atlassian-mcp-server
npm install

Step 2: Create API Token

1. Go to https://id.atlassian.com/manage-profile/security/api-tokens

2. Click Create API token

3. Give it a label (e.g., "MCP Server")

4. Copy the token (you won't be able to see it again!)

Step 3: Configure Environment Variables

1. Copy the example environment file:

   cp .env.example .env

2. Edit the .env file with your information:

   ATLASSIAN_DOMAIN=yourcompany.atlassian.net
   ATLASSIAN_EMAIL=your.email@company.com
   ATLASSIAN_API_TOKEN=your_api_token_here
   DEFAULT_JIRA_PROJECT=PROJ
   DEFAULT_CONFLUENCE_SPACE=DEV

   Important:

   • For ATLASSIAN_DOMAIN, only include the subdomain (e.g., mycompany.atlassian.net)

   • Do NOT include https:// in the domain

   • Use your actual Atlassian account email

   • Paste the API token you created in Step 2

Step 4: Build the Server

npm run build

Step 5: Test the Server (Optional)

You can test if the server starts correctly:

npm start

If you see "Atlassian MCP Server running on stdio", it's working! Press Ctrl+C to stop.

Step 6: Add to Claude Code Configuration

1. Find your Claude Code configuration file:

   • macOS: ~/Library/Application Support/Claude/claude_desktop_config.json

   • Windows: %APPDATA%\Claude\claude_desktop_config.json

2. Add the server configuration. If the file doesn't exist or is empty, create it with:

   {
     "mcpServers": {
       "atlassian": {
         "command": "node",
         "args": [
           "/Users/206632367@BWT3.COM/Documents/workspace/fd-github/atlassian-mcp-server/dist/index.js"
         ]
       }
     }
   }

   Note: Replace the path with the absolute path to your dist/index.js file.

   If you already have other MCP servers configured, just add the "atlassian" entry to the existing mcpServers object:

   {
     "mcpServers": {
       "existing-server": {
         ...
       },
       "atlassian": {
         "command": "node",
         "args": [
           "/Users/206632367@BWT3.COM/Documents/workspace/fd-github/atlassian-mcp-server/dist/index.js"
         ]
       }
     }
   }

3. Save the file and restart Claude Code completely (quit and reopen).

Usage Examples

Once connected, you can ask Claude to interact with your Jira and Confluence:

Jira Examples

"Search for all open bugs in project ABC"
"Show me details of issue ABC-123"
"Create a task in project ABC with summary 'Update documentation'"
"Add a comment to issue ABC-123 saying 'Working on this now'"
"Update ABC-123 status to 'In Progress'"

Confluence Examples

"Search for pages about 'API documentation' in the DEV space"
"Show me the content of the page titled 'Getting Started' in space DOCS"
"Create a new page in space DEV titled 'Meeting Notes' with content..."
"Update page 123456 with new content..."

Troubleshooting

Authentication Errors

If you get 401 Unauthorized errors:

• Verify your email is correct in .env

• Ensure your API token is valid and hasn't expired

• Check that you have access to the Jira/Confluence instance

Connection Errors

If Claude can't connect to the server:

• Make sure you've run npm run build

• Verify the path in claude_desktop_config.json is absolute and correct

• Check that Node.js is in your PATH

• Restart Claude Code completely

Tool Not Found

If Claude says it doesn't have access to Jira/Confluence tools:

• Ensure the server is listed in your MCP configuration

• Restart Claude Code

• Check the server logs for any startup errors

Finding Your Claude Config File

macOS:

open ~/Library/Application\ Support/Claude/

Windows:

%APPDATA%\Claude\

Development

To make changes to the server:

1. Edit files in src/

2. Rebuild: npm run build

3. Restart Claude Code to pick up changes

For development with auto-rebuild:

npm run watch

Security Notes

• Your API token is stored locally in the .env file

• Never commit .env to version control

• The server only runs locally and communicates directly with your Atlassian instance

• All authentication uses HTTPS

License

MIT