research_mcp
Provides integration with arXiv for scholarly search, enabling discovery of preprints and papers.
Provides integration with Brave Search as a backend for web search, enabling reliable server-side web discovery.
Provides integration with DuckDuckGo for web search, though it may be unreliable on server IPs due to bot blocking.
Provides tools to search, read, and write notes in an Obsidian vault, enabling interaction with a local knowledge base.
Provides integration with the Open Science Framework (OSF) for scholarly search and discovery of research outputs.
Provides integration with SearXNG as a self-hosted backend for web search, enabling privacy-respecting discovery.
Provides tools to search and save references to a local Zotero library, enabling reference management.
Click on "Install Server".
Wait a few minutes for the server to deploy. Once ready, it will show a "Started" state.
In the chat, type
@followed by the MCP server name and your instructions, e.g., "@research_mcpsearch literature on remote work productivity"
That's it! The server will respond to your query, and you can continue using it as needed.
Here is a step-by-step guide with screenshots.
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| research _ mcp |
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| a research institute, in a server |
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|______________________________________________________|An MCP server that mirrors the skills and workflows of an industry-leading research institute — academic rigour and private-sector pragmatism — exposed to any MCP-capable client (Claude Desktop, Claude Code, Antigravity, and others).
research_mcp encodes the craft of research as a set of reasoning tools, a curated knowledge base, and end-to-end workflows. It is grounded in a defensible canon of methodological authority (see SOURCE_AUTHORITY.md) so that its guidance is principled and consistent, not improvised.
It runs locally over stdio, so it composes with tools already on your machine — curl/wget for retrieval and your installed Chrome (via Playwright) for JavaScript-heavy pages — and with free, keyless scholarly APIs (OpenAlex, Crossref, arXiv, OSF) plus Unpaywall for open-access full text. HTML and PDF are converted to text in-process (no pandoc/pdftotext required).
~ . ~ . ~ . ~ . ~ . ~ . ~ . ~ . ~ . ~ . ~ . ~ . ~ . ~ . ~The research lifecycle
A great research institute does a handful of things exceptionally well, in sequence. research_mcp provides a tool, a workflow, or both for each stage:
scope ──▶ design ──▶ instrument ──▶ find & appraise ──▶ synthesise
│
translate ◀── govern ◀── review ◀── analyse ◀──────────────┘The methodology core is domain-agnostic — it works for any field — with an optional HR / people-analytics lens that adds presets, workforce-survey templates, and a "translate findings into an HRLT or board brief" capability.
Related MCP server: Percival Deep Research
Features
Everything the server exposes, at a glance:
research_mcp
│
├── tools (27)
│ │
│ ├── research craft (11)
│ │ scope-question sharpen a fuzzy idea into researchable questions
│ │ design-study choose a fit-for-purpose design + validity threats
│ │ develop-instrument build surveys/protocols with a reliability plan
│ │ plan-analysis pick the analysis; guard against p-hacking/HARKing
│ │ appraise-evidence risk-of-bias + GRADE appraisal of a study
│ │ appraise-source credibility/provenance of a non-study source (CRAAP/SIFT)
│ │ synthesise-evidence evidence table, heterogeneity, certainty of a body
│ │ check-reporting validate against PRISMA/CONSORT/STROBE/COREQ/TRIPOD/AGREE
│ │ peer-review a rigorous, constructive reviewer report
│ │ assess-ethics Belmont/Helsinki/integrity/open-science/responsible-AI
│ │ translate-to-practice turn findings into a decision-maker brief (BLUF)
│ │
│ ├── retrieval & discovery (8)
│ │ fetch-url retrieve web content server-side (curl→wget→Chrome)
│ │ web-search open-web discovery (Brave / SearXNG / DuckDuckGo)
│ │ search-literature scholarly search (OpenAlex, Crossref, arXiv, OSF)
│ │ fetch-paper paper → metadata + open-access full text (Unpaywall)
│ │ extract-from-pdf in-process PDF text extraction
│ │ citation-graph forward/backward citation neighbourhood of a paper
│ │ author-profile researcher metrics and key works
│ │ export-bibliography BibTeX / RIS / CSL-JSON via DOI content negotiation
│ │
│ ├── local integrations (5)
│ │ zotero-search search your local Zotero library
│ │ zotero-save save a paper to Zotero
│ │ vault-search search your Obsidian vault
│ │ vault-read read a vault note
│ │ vault-write-note write a note into your vault
│ │
│ └── HR / people-analytics lens (3)
│ people-analytics-preset frame an HR study (engagement, attrition, DEI…)
│ workforce-survey-template assemble a validated-style workforce survey
│ governance-check review an AI/data use against risk tiers + checklist
│
├── workflow prompts (4)
│ study-design-sprint idea → question → design → instrument → analysis → ethics
│ systematic-review protocol → search → screen → appraise → synthesise → PRISMA
│ evidence-brief rapid evidence assessment → audience-tuned decision brief
│ peer-review-pass full manuscript review with deep dives
│
└── knowledge resources (11)
research://research-design design canon + the four validities
research://appraisal risk-of-bias frameworks + GRADE
research://reporting-standards PRISMA/CONSORT/STROBE/COREQ/TRIPOD/AGREE
research://measurement scale development, reliability/validity, surveys
research://analysis test selection, ASA p-value principles, qual coding
research://synthesis review types, synthesis methods, the SR pipeline
research://ethics Belmont, Helsinki, integrity, open science, AI use
research://source-hierarchy the 7-tier source-quality cadence
research://practice-translation evidence-based-management translation (HR lens)
research://hr-lens people-analytics presets and survey blocks
research://governance AI/data governance risk tiers + checklistThe data tools (search-literature, web-search, author-profile, citation-graph) also return machine-readable structuredContent alongside their text.
Architecture
research_mcp (stdio MCP server, TypeScript)
├── tools/ reasoning skills (scope, design, appraise, synthesise, review, translate…)
├── resources/ the knowledge base (methodology canon, reporting standards, ethics)
├── prompts/ end-to-end workflows (systematic review, study-design sprint, evidence brief…)
└── lib/ codified canon, scholarly connectors, the retrieval ladder, in-process extractionLocal-first by design. Running on your machine, retrieval carries your IP/VPN and a real browser User-Agent, so it reaches what you can reach; Zotero, your Obsidian vault, and system Chrome are all on
localhost.Retrieval ladder. An allow-listed
curl→wget→ headless-Chrome (Playwright) escalation; HTML/PDF are converted to text in-process (jsdom + Readability + Turndown; pdfjs).Knowledge-grounded. Tools compose a codified canon (
lib/data/) into structured guidance rather than improvising; conflicts resolve viaSOURCE_AUTHORITY.md.
Source-quality cadence
Discovery spans peer-reviewed literature and the open web, governed by a 7-tier source-quality cadence: syntheses → peer-reviewed → preprints → official/primary documents → expert secondary → interested primary → general web. Results are ranked so cited, peer-reviewed work outranks zero-citation preprints, but the cadence descends legitimately for novel or fast-moving topics (e.g. an emerging AI legal matter) where primary documents and expert analysis outweigh thin academic evidence. appraise-source weighs any non-study source by provenance and interest.
Quick start
git clone https://github.com/simonives/research_mcp.git
cd research_mcp
npm install
npm run build
npm start # runs the server over stdioRegister with Claude Code (run from the repo root, or use an absolute path):
claude mcp add research -s user -- node "$(pwd)/dist/index.js"Or add to a Claude Desktop / Antigravity MCP config block pointing at dist/index.js. Reconnect/restart the client after registering or rebuilding so it picks up the latest tools.
Configuration
Configuration is supplied via environment variables, or a gitignored .env in the project root — copy .env.example and fill it in. The server loads .env on startup (resolved relative to the project, so it works from any directory); anything already set in the environment or MCP-client config takes precedence. All variables are optional — the offline core needs none.
Variable | Enables |
| Path to an Obsidian vault → activates the |
| Override the Zotero local API base (default |
| Email for scholarly-API "polite pools" and to enable the Unpaywall OA resolver |
| Override the browser User-Agent used by |
| Where retrieved files and API responses are cached |
| Brave Search API key → reliable backend for |
| A SearXNG instance URL → self-hosted backend for |
| Force |
Note on
web-search: keyless scraping (DuckDuckGo) is frequently bot-blocked from a server IP. For reliable server-side web search, setRESEARCH_MCP_BRAVE_KEYorRESEARCH_MCP_SEARXNG_URL; otherwise use the assistant's own web search for discovery andfetch-urlto retrieve. Shadow libraries (e.g. LibGen) are deliberately not integrated; for paywalled works use Unpaywall OA, acookie_filefor entitled access, or interlibrary loan.
Zotero tools also require the Zotero 7+ desktop app running with its local API enabled.
Development
npm run build # compile TypeScript → dist/
npm run dev # run from source with tsx
npm run typecheck # type-check without emitting
npm test # regression harness over stdio (offline, CI-safe)
npm run test:online # + live connector checks (network)The test harness (scripts/smoke-test.mjs) drives the built server over the MCP protocol and asserts the contract of every tool, prompt, and resource — run it after any change. Contribution guidelines are in CONTRIBUTING.md.
Knowledge integrity
This server makes claims about research methodology. When sources conflict, it resolves them using an explicit authority hierarchy documented in SOURCE_AUTHORITY.md. Contributions that enrich the knowledge base must follow that hierarchy.
Built with Claude Code
research_mcp was designed and built with Claude Code (Anthropic) — from the initial scaffolding through implementation, live testing, and configuration — pair-built with its author. The methodology it encodes remains grounded in the human authorities catalogued in SOURCE_AUTHORITY.md.
License
MIT © 2026 Simon Ives
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