search
Search public research data archives, omics registries, and literature for datasets, software, publications, and sequencing data across Zenodo, DataCite, NCBI omics, and PubMed/OpenAIRE.
Instructions
Search public research-data archives, omics registries, and the literature for datasets, software, publications, and sequencing data. Fans out across Zenodo, DataCite (Dryad, Figshare, Dataverse, OSF, Mendeley), NCBI omics (GEO, SRA, BioProject), and literature (PubMed + OpenAIRE). Returns compact DataResource records; per-source failures are reported in errors{}. Use resolve for the full record (SRA resolve attaches the ENA FASTQ manifest; publication resolve attaches links[] to datasets/accessions, normalized identifiers (pmid/pmcid/doi), and — when open access — a full-text file), then fetch to download files. Pass organism= to expand the query with NCBI-Taxonomy synonyms; results carry normalized taxa[] + plant cross-links.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | Free-text search query | |
| size | No | Max results (1-50, default 10) | |
| sources | No | Restrict fan-out to these sources (default: all). Available: zenodo, datacite, omics, literature | |
| organism | No | Optional organism name. Resolved via NCBI Taxonomy; the query is expanded with the canonical name + synonyms (e.g. 'Orobanche aegyptiaca' also matches 'Phelipanche aegyptiaca'). The expansion is echoed in taxon_expansion. |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| query | Yes | ||
| total | Yes | ||
| count | Yes | ||
| results | No | ||
| errors | No | ||
| next_cursor | No | ||
| taxon_expansion | No |