create_workspace
Creates the exact RASPA2 simulation directory layout and copies the CIF file into place, preventing path errors.
Instructions
Create a properly structured RASPA2 simulation workspace directory.
RASPA2 expects a specific directory layout. This tool creates it and copies the CIF file into the right location.
Structure created: / simulation.input ← Claude writes this force_field_mixing_rules.def ← Claude writes this pseudo_atoms.def ← Claude writes this frameworks/ / .cif molecules/ TraPPE/ ← Claude writes .def files here
Args: work_dir: Absolute path for the new simulation directory. framework_name: Name matching the CIF file (without .cif extension). cif_source_path: Absolute path to the existing CIF file.
Security:
work_dir must resolve to a path inside the allowed workspace base,
controlled by the RASPA_MCP_WORKSPACE_BASE environment variable
(default: ~/raspa_workspaces). This prevents an LLM from creating
directories or copying files at arbitrary filesystem locations
(e.g. /etc, /root) when this MCP runs as a privileged user.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| work_dir | Yes | ||
| framework_name | Yes | ||
| cif_source_path | Yes |