Schema | pubmed-clinical-mcp

pubmed-clinical-mcp

Describes the environment variables required to run the server.

Name	Required	Description
`NCBI_EMAIL`	No	Email address recommended for NCBI E-utilities usage.
`NCBI_API_KEY`	No	Optional NCBI API key to raise rate limits.
`UNPAYWALL_EMAIL`	No	Email address required for Unpaywall checks.
`PUBMED_MCP_CACHE_PATH`	No	Path to a local JSON cache file. Optional.

Features and capabilities supported by this server

Capability	Details
`tools`	{ "listChanged": false }
`prompts`	{ "listChanged": false }
`resources`	{ "subscribe": false, "listChanged": false }
`experimental`	{}

Functions exposed to the LLM to take actions

Name	Description
build_clinical_queryB	Convert a natural-language clinical question into a PubMed-ready query.
search_pubmedB	Search PubMed and return PMIDs plus a lightweight metadata summary.
fetch_pubmed_articlesC	Fetch PubMed title, abstract, authors, journal, year, DOI, MeSH, and publication types.
rank_articlesA	Rank article summaries against a clinical question and explain relevance.
search_and_fetch_pubmedC	Build a clinical PubMed query, search PubMed, fetch articles, and return ranked summaries.
fetch_pmc_full_textB	Fetch legal PubMed Central full-text sections when a PMCID is available.
check_full_text_availabilityC	Check PMC and Unpaywall for legal full-text availability.
find_related_articlesC	Find related PubMed articles through NCBI elink.
extract_picoB	Extract a rough PICO structure from an abstract or article passage.
summarize_evidenceC	Summarize article evidence into a table, limitations, and citation-backed findings.

Interactive templates invoked by user choice

Name	Description
No prompts

Contextual data attached and managed by the client

Name	Description
No resources

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