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hqn21

protocols-io-mcp-server

search_public_protocols

Search for public scientific protocols on protocols.io by keyword, sorted by popularity with paginated results, to find reference protocols for developing new methods.

Instructions

Search for public protocols on protocols.io using a keyword. Results are sorted by protocol popularity and paginated with 3 protocols per page (use the page parameter to navigate, default is 1).

When searching for reference protocols to create a new protocol:

  • Avoid referencing protocols from before 2015 as they may be outdated.

  • If the found protocols have topics that are not closely related to your needs, ask the user for clearer direction before proceeding.

  • If the found protocols are highly relevant, use get_protocol_steps to examine at least 2 protocols' detailed steps and integrate insights from different approaches to ensure more reliable protocol development.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
keywordYesKeyword to search for protocols
pageNoPage number for pagination, starting from 1

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations, the description fully discloses behavioral traits: results sorted by popularity, pagination with 3 per page, default page=1, and the page parameter to navigate. This goes beyond what input schema provides.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is concise and front-loaded: first sentence states core purpose and key behaviors, second paragraph adds detailed usage guidelines. Every sentence adds value; no duplication or fluff.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the presence of an output schema, the description covers all needed context: purpose, behavioral details (sorting, pagination), and post-search actions. It is fully complete for an AI agent to select and use the tool correctly.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100%, so baseline is 3. The description adds minimal parameter semantics beyond schema (e.g., keyword is search term, page is for pagination with default), but does not significantly enhance understanding of parameter values or constraints.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action ('search for public protocols') and the resource ('protocols.io') with a specific scope ('public'). It distinguishes from sibling tools like get_protocol or get_my_protocols by specifying public search.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides explicit when-to-use guidance: for creating a new protocol, avoid pre-2015 protocols, ask for clearer direction if topics are not closely related, and if highly relevant, use get_protocol_steps to examine at least 2 protocols. This clearly differentiates from alternatives.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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