chemdraw_draw_structures
Convert 1–24 SMILES records into a native ChemDraw figure with aligned scaffolds, cleanup, and editable vector/PNG output in a new directory.
Instructions
Create a native ChemDraw figure from 1..24 explicit {compound_id,label,smiles} records. Labels are caller supplied, not verified names. Connected supported nonradical structures only. RDKit supplies MOL coordinate seeds; actual ChemDraw imports, runs native Clean Up Structure and renders. Optional scaffold_smiles explicitly selects a common core, rigidly aligned to the first native structure without reflection; poor fits fail, no inferred core. Checks identity after import/cleanup and measured grid after native save. New absolute output directory, editable/vector/PNG preview and audit. Final document stays open, originals untouched. No name lookup or yields. Review stereo and intramolecular collisions visually. Native uncertainty stops without retry/close.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| layout | No | ||
| pixels | No | ||
| preset | No | house | |
| columns | No | ||
| output_dir | Yes | ||
| structures | Yes | ||
| charge_style | No | plain | |
| scaffold_smiles | No |