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Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault
MNOVA_EXENoMestReNova.exe path; if not set, common install locations will be detected.
MNOVA_MCP_WORKSPACENoProject root directory allowed for MCP read/write.
MNOVA_MCP_OUTPUT_ROOTNoTask output root directory.
MNOVA_MCP_TIMEOUT_SECNoMnova task timeout in seconds, default 300.300
MNOVA_MCP_RUNTIME_ROOTNoASCII temporary bridge directory passed to Mnova.
MNOVA_MCP_BRIDGE_SCRIPTNoCustom bridge.qs path.

Capabilities

Features and capabilities supported by this server

CapabilityDetails
tools
{
  "listChanged": false
}
prompts
{
  "listChanged": false
}
resources
{
  "subscribe": false,
  "listChanged": false
}
experimental
{}

Tools

Functions exposed to the LLM to take actions

NameDescription
mnova_statusA

Check MestReNova, bridge readiness, supported formats, and workflow.

mnova_process_1dB

Process 1D NMR data with Mnova and export auditable spectrum artifacts.

mnova_prepare_structure_1dA

Open 1D NMR plus CDX/CDXML (or another supported structure) in Mnova.

Processes the spectrum, extracts atom metadata and stable peak/multiplet IDs, optionally runs Mnova Verify, and saves a prepared .mnova document. The result is the evidence package used to create a separate assignment-plan JSON.

mnova_apply_assignments_1dA

Validate and write an assignment plan into a prepared Mnova document.

Links molecule atoms/protons to real Mnova multiplet UUIDs, writes matching
lowercase letter labels onto the structure and directly above the assigned
peaks, optionally reruns Mnova Verify, and saves a new assigned .mnova file.
Each plan entry requires a lowercase ``label``. Low-confidence assignments
are rejected unless explicitly allowed.

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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