flowchart TB
    subgraph API["API Layer"]
        direction LR
        MCP["MCP Protocol"]
        Val["Validation"]
        Rate["Rate Limiting"]

        MCP --> Val --> Rate
    end

    subgraph Features["Feature Modules"]
        direction LR
        Repo["Repository Management"]
        Branch["Branch Management"]
        Issue["Issue Management"]
        PR["Pull Request Management"]
        File["File Management"]
        Release["Release Management"]

        Repo <--> Branch
        Repo <--> Issue
        Repo <--> PR
        Repo <--> File
        Branch <--> PR
    end

    subgraph Services["Services Layer"]
        direction LR
        GitHub["GitHub Service"]
        Mapper["Response Mapper"]
        RateLimiter["Rate Limiter"]

        GitHub <--> RateLimiter
        GitHub <--> Mapper
    end

    Rate --> Repo
    Rate --> Branch
    Rate --> Issue
    Rate --> PR
    Rate --> File
    Rate --> Release

    Repo --> GitHub
    Branch --> GitHub
    Issue --> GitHub
    PR --> GitHub
    File --> GitHub
    Release --> GitHub

    classDef layer fill:#2d3748,stroke:#4299e1,stroke-width:3px,rx:5,color:#fff
    classDef component fill:#1a202c,stroke:#a0aec0,stroke-width:2px,rx:3,color:#fff
    classDef api fill:#3182ce,stroke:#90cdf4,stroke-width:2px,rx:3,color:#fff
    classDef features fill:#319795,stroke:#81e6d9,stroke-width:2px,rx:3,color:#fff
    classDef services fill:#2f855a,stroke:#9ae6b4,stroke-width:2px,rx:3,color:#fff

    class API,Features,Services layer
    class MCP,Val,Rate api
    class Repo,Branch,Issue,PR,File,Release features
    class GitHub,Mapper,RateLimiter services

{
  "mcpServers": {
    "github": {
      "command": "node",
      "args": ["/path/to/github-mcp-server/build/index.js"],
      "env": {
        "GITHUB_TOKEN": "your_github_personal_access_token",
        "LOG_LEVEL": "info",
        "SERVER_NAME": "github-mcp-server"
      }
    }
  }
}

/src
  /configuration             // Application configuration
  /dependencyInjection       // Tool registry and DI container
  /features                  // Feature modules organized by domain
    /repositoryManagement
      /resources             // Read operations
      /modifications         // Write operations
    /branchManagement
    /issueManagement
    /pullRequestManagement
    /fileManagement
    /releaseManagement
  /services                  // External service integrations
    /githubAccess            // GitHub API client and utilities
  /types                     // Core type definitions
  /utilities                 // Helper functions and utilities