Skip to main content
Glama
codeocean

Code Ocean MCP Server

Official
by codeocean

run_capsule

Execute Code Ocean capsules or pipelines with specified parameters and data assets to run computational workflows and retrieve results.

Instructions

Execute a capsule or pipeline with specified parameters and data assets.

For capsule execution: Set run_params.capsule_id and optionally provide data_assets, parameters, or named_parameters.

For pipeline execution: Set run_params.pipeline_id and optionally provide data_assets, processes (with process-specific parameters), and nextflow_profile configuration.

Typical workflow: 1) run_capsule() to start execution 2) wait_until_completed() to monitor progress 3) list_computation_results() and get_result_file_urls() to retrieve outputs.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
run_paramsYes

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/codeocean/codeocean-mcp-server'

If you have feedback or need assistance with the MCP directory API, please join our Discord server