search_entities
Search the biomedical entity graph to find papers mentioning a condition, drug, or gene, reveal co-occurring entities, and compare shared entities between two papers.
Instructions
Search the biomedical entity graph. Use this when the user asks about which papers mention a condition/drug/gene, what entities co-occur, or what two papers have in common. Query types: 'by_name' (papers mentioning an entity), 'by_type' (common entities of a type, or list all types if no type given), 'co_occurrence' (entities that co-occur with a given entity), 'shared_entities' (entities shared by two papers — requires doi_a and doi_b), 'paper_entities' (all entities extracted from a paper — requires doi).
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| doi | No | ||
| doi_a | No | ||
| doi_b | No | ||
| limit | No | ||
| query_type | Yes | ||
| entity_name | No | ||
| entity_type | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |