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ctxlint

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One click adds this to your local Yaw MCP config so it's available in every Yaw Terminal session. Or install manually below.

npm version License: MIT GitHub stars MCP Compliance

Lint your AI agent context files, MCP server configs, and session data against your actual codebase. Context linting + MCP config linting + session auditing. 16 AI tools, 8 MCP clients, cross-project consistency, auto-fix. Works as a CLI, CI step, pre-commit hook, or MCP server.

Your CLAUDE.md is lying to your agent. Your .mcp.json has a hardcoded API key. ctxlint catches both.

Why ctxlint?

Every AI coding tool ships a context file: CLAUDE.md, .cursorrules, AGENTS.md, .mcp.json. These files are the single most important interface between you and your agent — they tell it what to build, how to test, where things live.

But context files rot fast. You rename a file, change a build script, or switch from Jest to Vitest — and your CLAUDE.md still says the old thing. Your agent follows those stale instructions faithfully, then fails. You lose 10 minutes debugging what turns out to be a wrong path in line 12 of a markdown file.

Multiply that across a team with 5 context files, 3 MCP configs, and 2 people who touched the build system last week — and you have a real problem with no existing solution.

ctxlint is a linter purpose-built for this. It reads your context files, cross-references them against your actual codebase, and catches the drift before your agent does.

  • Instant startup — ships as a single self-contained bundle with zero runtime dependencies. npx downloads a ~400 KB tarball and starts immediately

  • Catches real problems — broken paths, wrong commands, stale references, contradictions across files

  • Smart suggestions — detects git renames and fuzzy-matches to suggest the right path

  • Auto-fix — --fix rewrites broken paths automatically using git history

  • Token-aware — shows how much context window your files consume and flags redundant content

  • Every AI tool — supports Claude Code, Cursor, Copilot, Windsurf, Gemini, Cline, Aider, and 9 more

  • Multiple outputs — text, JSON, and SARIF (GitHub Code Scanning)

  • MCP server — 7 tools for IDE/agent integration with tool annotations for auto-approval

  • Watch mode — --watch re-lints automatically when context files change

Related MCP server: mcp-lint-tools

Install

Run directly (no install needed):

npx -y @yawlabs/ctxlint@latest
npm install -D @yawlabs/ctxlint
# or
pnpm add -D @yawlabs/ctxlint

Then add to your package.json scripts:

{
  "scripts": {
    "lint:ctx": "ctxlint --strict"
  }
}

Global install

npm install -g @yawlabs/ctxlint

Useful if you want ctxlint available in every project without per-project setup.

What It Checks

Check

What it finds

Broken paths

File references in context that don't exist in your project

Wrong commands

Build/test commands that don't match your package.json scripts or Makefile targets, and Gradle project paths or Maven -pl modules your build doesn't declare

Stale context

Context files not updated after recent code changes

Token waste

How much context window your files consume per session

Redundancy

Content the agent can already infer (e.g. "We use React" when react is in package.json)

Contradictions

Conflicting directives across context files (e.g. "use Jest" in one, "use Vitest" in another)

Frontmatter

Invalid or missing YAML frontmatter in Cursor .mdc, Copilot instructions, and Windsurf rules

CI coverage

Release/deploy workflows in .github/workflows/ not documented in any context file

CI secrets

Secrets used in CI workflows (${{ secrets.X }}) not mentioned in context files

Inline secrets

Real secrets pasted into context files — private-key headers, AWS/GitHub/Anthropic/OpenAI/npm/Slack/Google/Stripe token shapes. Messages never echo the secret (6-char redacted prefix only)

Dead hooks

PreToolUse hooks / permissions entries in .claude/settings.json pointing at scripts that no longer exist (a dead gate silently no-ops). Scans project .claude/settings.json[.local] by default; pass --hooks-global to also scan the user-global ~/.claude/settings.json

Missing secrets

GitHub secrets set on sibling repos but missing from current project

Diverged configs

Canonical config files (CI, tsconfig, etc.) drifting across sibling projects

Missing workflows

GitHub Actions workflows present in 2+ siblings but absent here

Stale memory

Claude Code memory entries referencing paths that no longer exist

Duplicate memory

Near-duplicate memories across projects (>60% content overlap)

Loop detection

Agent stuck in loops — repeated commands or cyclic patterns in session history

Memory overflow

MEMORY.md past Claude Code's 200-line / 25KB session-load cap — entries beyond it are invisible to the agent

Shared temp path

A fixed temp path (e.g. /tmp/pkg.bak) the agent writes and later reads back — any concurrent session can overwrite it in between

Unverified gate

A lint/typecheck/test/build run that errored or printed nothing, followed by agent prose claiming it passed

Default-branch edits

10+ files edited on main/master with no intervening commit or branch-away

Unresolvable SHA

A memory cites a commit SHA that does not resolve in this repository

Large reads

Whole-file Reads of 4,000+ tokens, with an estimate of the tokens they re-send as cached context on later turns (an info-level baseline)

Supported Context Files

File

Tool

CLAUDE.md, CLAUDE.local.md, .claude/rules/*.md

Claude Code

AGENTS.md, AGENT.md, AGENTS.override.md

AAIF / Multi-agent standard

.cursorrules, .cursor/rules/*.md, .cursor/rules/*.mdc, .cursor/rules/*/RULE.md

Cursor

.github/copilot-instructions.md, .github/instructions/*.md, .github/git-commit-instructions.md

GitHub Copilot

.windsurfrules, .windsurf/rules/*.md

Windsurf

GEMINI.md

Gemini CLI

.clinerules

Cline

.aiderules

Aider

.aide/rules/*.md

Aide / Codestory

.amazonq/rules/*.md

Amazon Q Developer

.goose/instructions.md, .goosehints

Goose by Block

.junie/guidelines.md, .junie/AGENTS.md

JetBrains Junie

.aiassistant/rules/*.md

JetBrains AI Assistant

.continuerules, .continue/rules/*.md

Continue

.rules

Zed

replit.md

Replit

MCP Server Config Linting

ctxlint also lints MCP server configuration files — the JSON configs that tell AI clients which tools to connect to. These are context interfaces too: they shape what your agent can do.

# Lint context files + MCP configs
npx @yawlabs/ctxlint@latest --mcp

# Lint only MCP configs
npx @yawlabs/ctxlint@latest --mcp-only

# Include global/user-level configs (Claude Desktop, Cursor, Windsurf, etc.)
npx @yawlabs/ctxlint@latest --mcp-global

What MCP config files are scanned

File

Client

.mcp.json

Claude Code (universal project config)

.cursor/mcp.json

Cursor

.vscode/mcp.json

VS Code / GitHub Copilot

.amazonq/mcp.json

Amazon Q Developer

.continue/mcpServers/*.json

Continue

With --mcp-global, also scans Claude Desktop, Cursor, Windsurf, and Amazon Q global configs.

What MCP config checks catch

Check

What it finds

Schema

Invalid JSON, wrong root key (servers vs mcpServers), missing required fields

Security

Hardcoded API keys and Bearer tokens in git-tracked config files

Commands

Missing cmd /c wrapper for npx on Windows, broken file paths in args

Deprecated

SSE transport usage (deprecated March 2025, use Streamable HTTP)

Env vars

Wrong env var syntax for the client (${VAR} vs ${env:VAR} vs ${{ secrets.VAR }})

URLs

Malformed URLs, localhost in project configs, missing path component

Consistency

Same server configured differently across client configs

Redundancy

Disabled servers, identical configs at multiple scopes

Example MCP config output

MCP Configs
  .mcp.json
    ✗ mcp-security    Server "api": hardcoded Bearer token in a git-tracked file
    ✗ mcp-deprecated  Server "old-svc": SSE transport is deprecated — use "http"
    ✓ mcp-schema
    ✓ mcp-commands
  .cursor/mcp.json
    ✗ mcp-env  Server "api": Cursor uses ${env:VAR}, not ${VAR}
    ✓ mcp-schema
  .vscode/mcp.json
    ✗ mcp-schema  .vscode/mcp.json must use "servers" as root key, not "mcpServers"

Cross-file
    ⚠ Server "api" is configured differently in .mcp.json and .cursor/mcp.json
    ℹ Server "db" is in .mcp.json but missing from .cursor/mcp.json

Summary: 3 errors, 2 warnings, 1 info

MCP Config Linting Specification

The full specification for MCP config linting rules, the cross-client config landscape, and a machine-readable rule catalog are published as open specifications:

  • MCP_CONFIG_LINT_SPEC.md — the full lint-rule set (rule count in the Specifications family table), the complete client/format reference, and implementation guidance. Tool-agnostic — any linter can implement it.

  • mcp-config-lint-rules.json — Machine-readable rule catalog for programmatic consumption by AI agents, CI systems, and other tools.

Session Linting

ctxlint can audit AI agent session data — history files and memory entries — for cross-project consistency. Session checks compare your current project against sibling repos to catch drift and missing setup.

# Lint context files + session data
npx @yawlabs/ctxlint@latest --session

# Lint only session data
npx @yawlabs/ctxlint@latest --session-only

Session checks are opt-in because they access files outside the project directory (agent history in your home directory, sibling repos in the parent directory).

What session files are scanned

Agent

History

Memory

Claude Code

~/.claude/history.jsonl

~/.claude/projects/*/memory/*.md

Codex CLI

~/.codex/history.jsonl

—

Checks whose signal is what the agent did (commands run, files written or read) also read the current project's Claude Code session transcripts, ~/.claude/projects/<encoded-project>/*.jsonl, bounded to the 5 most recent.

What session checks catch

Check

What it finds

Missing secrets

gh secret set ran on 2+ sibling repos but not this one

Diverged configs

Shared config files (CI workflows, tsconfig, .prettierrc, etc.) with 20-90% line overlap — enough to be related, different enough to be drifting

Missing workflows

GitHub Actions workflows in 2+ siblings but absent from this project

Stale memory

Memory entries referencing file paths that no longer exist

Duplicate memory

Near-duplicate memory entries across projects (>60% overlap)

Loop detection

Agent stuck in a loop — 3+ consecutive identical commands, or cyclic A,B,A,B patterns

Memory index overflow

MEMORY.md exceeds Claude Code's documented 200-line / 25KB session-load cap, so entries past the cap are invisible to the agent

Shared temp path

A fixed temp path (e.g. /tmp/pkg.bak) the agent writes and later reads back — any concurrent session can overwrite it in between

Unverified gate

A lint/typecheck/test/build run that errored or printed nothing, followed by agent prose claiming it passed

Default-branch edits

10+ files edited on main/master with no intervening commit or branch-away

Unresolvable SHA

A memory cites a commit SHA that does not resolve in this repository

Large reads

Whole-file Reads of 4,000+ tokens, with an estimate of the tokens they re-send as cached context on later turns (an info-level baseline)

Session Linting Specification

Example Output

ctxlint v0.28.2

Scanning /Users/you/my-app...

Found 2 context files (1,847 tokens total)
  CLAUDE.md (1,203 tokens, 42 lines)
  AGENTS.md -> CLAUDE.md (symlink)

CLAUDE.md
  ✗ Line 12: src/auth/middleware.ts does not exist
    → Did you mean src/middleware/auth.ts? (renamed 14 days ago)
  ✗ Line 8: "pnpm test" — script "test" not found in package.json
  ⚠ Last updated 47 days ago. src/routes/ has 8 commits since.
  ⚠ testing framework conflict: "Vitest" in CLAUDE.md vs "Jest" in AGENTS.md
  ℹ Line 3: "Express" is in package.json dependencies — agent can infer this

Summary: 2 errors, 2 warnings, 1 info
  Token usage: 1,203 tokens per agent session
  Estimated waste: ~55 tokens (redundant content)

Options

Usage: ctxlint [options] [command] [path]

Arguments:
  path                 Project directory to scan (default: ".")

Options:
  --strict                  Exit code 1 on any warning or error (for CI)
  --checks <list>           Comma-separated checks to run (see below)
  --ignore <list>           Comma-separated checks to skip
  --fix                     Auto-fix broken paths using git history and fuzzy matching
  --fix-dry-run             Preview --fix changes without writing
  --yes                     Skip interactive confirmation prompts (required for --fix in TTY)
  --follow-symlinks         Allow --fix to write through symlinks (default: skip)
  --format <fmt>            Output format: text, json, or sarif (default: text)
  --tokens                  Show token breakdown per file
  --verbose                 Show passing checks too
  --quiet                   Suppress all output except errors (exit code only)
  --config <path>           Path to config file (default: .ctxlintrc in project root)
  --depth <n>               Max subdirectory depth to scan (default: 2)
  --mcp                     Enable MCP config linting alongside context file checks
  --mcp-only                Run only MCP config checks, skip context file checks
  --mcp-global              Also scan user/global MCP config files (implies --mcp)
  --session                 Enable session audit checks (cross-project consistency)
  --session-only            Run only session checks, skip context and MCP checks
  --skills                  Run agent-skill checks (~/.claude/skills + ~/.claude/agents)
  --skills-only             Run only agent-skill checks, skip everything else
  --hooks-global            Also scan the user-global ~/.claude/settings.json in the
                            dead-hook check (default scans project .claude/ only)
  --mcp-server              Start the MCP server (alias: `serve` subcommand)
  --lsp                     Start in LSP server mode (JSON-RPC over stdio for editor integration)
  --no-ignore-file          Disable .ctxlintignore suppression (see all findings)
  --watch                   Re-lint on context file changes
  -V, --version             Output the version number
  -h, --help                Display help

Commands:
  init                 Set up a git pre-commit hook
  serve                Start the MCP server (same as --mcp-server)

Available checks: paths, commands, staleness, tokens, tier-tokens, redundancy, contradictions, frontmatter, ci-coverage, ci-secrets, content-secrets, hook-coverage, mcp-schema, mcp-security, mcp-commands, mcp-deprecated, mcp-env, mcp-urls, mcp-consistency, mcp-redundancy, session-missing-secret, session-diverged-file, session-missing-workflow, session-stale-memory, session-duplicate-memory, session-loop-detection, session-memory-index-overflow, session-shared-temp-path, session-unverified-gate-claimed-clean, session-default-branch-accumulation, session-unresolvable-sha, session-large-read, skill-frontmatter, skill-broken-ref, skill-trigger-collision, skill-orphaned, skill-dead-tool-restriction

Passing any mcp-* check name implies --mcp. Passing any session-* check name implies --session. Passing any skill-* check name implies --skills.

Watch Mode

npx @yawlabs/ctxlint@latest --watch

Re-lints automatically when any context file, MCP config, or package.json changes. Useful during development when you're editing context files alongside code.

Use in CI

- name: Lint context files
  run: npx @yawlabs/ctxlint@latest --strict

Exit Codes

Code

Meaning

0

Success — no issues, or issues below the strict threshold

1

Strict mode caught at least one error or warning (--strict is set)

2

Config error, invalid CLI option, or internal failure

In non-strict mode ctxlint always exits 0 — it's a reporting tool by default. Pass --strict to enforce in CI.

GitHub Action

- name: Lint context files
  uses: yawlabs/ctxlint-action@v1

Or with options:

- name: Lint context files
  uses: yawlabs/ctxlint-action@v1
  with:
    args: '--strict --mcp'

SARIF Output (GitHub Code Scanning)

- name: Lint context files
  run: npx @yawlabs/ctxlint@latest --format sarif > ctxlint.sarif

- name: Upload SARIF
  uses: github/codeql-action/upload-sarif@v3
  with:
    sarif_file: ctxlint.sarif

Auto-fix

npx @yawlabs/ctxlint@latest --fix

When a broken path was renamed in git or has a close match in the project, --fix rewrites the context file automatically.

Pre-commit Hook

Built-in

npx @yawlabs/ctxlint@latest init

Sets up a git pre-commit hook that runs ctxlint --strict before each commit.

pre-commit framework

Add to your .pre-commit-config.yaml:

repos:
  - repo: https://github.com/yawlabs/ctxlint
    rev: v0.28.2
    hooks:
      - id: ctxlint

Config File

Create a .ctxlintrc or .ctxlintrc.json in your project root:

{
  "checks": ["paths", "commands", "tokens", "contradictions", "frontmatter"],
  "ignore": ["redundancy"],
  "ignoreRules": [
    { "check": "paths", "match": "^docs/archive/", "reason": "archived docs cite removed files" }
  ],
  "strict": true,
  "tokenThresholds": {
    "info": 500,
    "warning": 2000,
    "error": 5000,
    "aggregate": 4000,
    "tierBreakdown": 1000,
    "tierAggregate": 4000
  },
  "contextFiles": ["CONVENTIONS.md", "docs/ai-rules.md"],
  "exclude": ["fixtures/**", "examples/**"]
}

The contextFiles array adds custom file patterns to scan alongside the built-in list. Useful for project-specific context files like CONVENTIONS.md.

The exclude array is its counterpart: globs of context files to drop from the scan entirely. Use it for files that are not this project's agent context at all — test fixtures, example projects, vendored templates.

exclude removes files, where ignore / ignoreRules / .ctxlintignore suppress findings. That distinction matters for the cross-file checks: contradictions and redundancy/duplicate-content compare the discovered set and report against the literal (project) path, which no per-file glob can match. Excluding the files is the only way to silence a conflict between two files you never wanted linted. Reach for .ctxlintignore when a real context file has one noisy finding; reach for exclude when the file shouldn't be in the corpus.

Config Reference

Field

Type

Default

Meaning

checks

string[]

all checks

Checks to run. Check names include paths, commands, tokens, tier-tokens, redundancy, contradictions, frontmatter, staleness, ci-coverage, ci-secrets, content-secrets, hook-coverage, plus any mcp-* / session-* / skill-*.

ignore

string[]

[]

Checks to skip, evaluated after checks.

ignoreRules

object[]

[]

Per-finding suppression, finer than ignore: each rule drops only the findings it matches, and the first matching rule wins. Rules that never fire, and rules missing a reason, are listed in the text report and in JSON _meta.ignoreReport.

ignoreRules[].check

string

required

The check the rule applies to, by exact name (paths, session-stale-memory, ...).

ignoreRules[].match

string

none

Regex tested against the finding's message. A rule with neither match nor pathPattern drops every finding of its check; with both, both must match.

ignoreRules[].pathPattern

string

none

Regex tested against each path a finding names; the rule fires only when every path matches. Honored only for session-stale-memory: on any other check the rule never fires, and loading the config prints a warning.

ignoreRules[].reason

string

none

Why the finding is suppressed. Optional, but rules without one are listed in the report for review.

strict

boolean

false

Exit non-zero on any warning or error.

tokenThresholds

object

see below

Per-file and cross-file token thresholds.

tokenThresholds.info

number

1000

Per-file info threshold for tokens/info.

tokenThresholds.warning

number

3000

Per-file warning threshold for tokens/large.

tokenThresholds.error

number

8000

Per-file error threshold for tokens/excessive.

tokenThresholds.aggregate

number

5000

Cross-file total threshold for tokens/aggregate.

tokenThresholds.tierBreakdown

number

1000

Always-loaded file threshold for tier-tokens/section-breakdown.

tokenThresholds.tierAggregate

number

4000

Combined always-loaded threshold for tier-tokens/aggregate.

contextFiles

string[]

[]

Extra glob patterns to scan alongside the built-in list.

exclude

string[]

[]

Globs of context files to drop from the scan entirely, matched against each file's project-relative path. Removes files rather than suppressing findings, so excluded files are also invisible to the cross-file checks.

mcp

boolean

false

Enable MCP config checks by default (same as --mcp).

mcpOnly

boolean

false

Run only MCP config checks, skip context-file checks (same as --mcp-only).

mcpGlobal

boolean

false

Also scan user/global MCP configs (same as --mcp-global).

session

boolean

false

Enable session audit checks (cross-project consistency); same as --session.

sessionOnly

boolean

false

Run only session checks, skip context and MCP checks (same as --session-only).

skills

boolean

false

Enable agent-skill checks (~/.claude/skills + ~/.claude/agents); same as --skills.

skillsOnly

boolean

false

Run only agent-skill checks, skip everything else (same as --skills-only).

hooksGlobal

boolean

false

Also scan the user-global ~/.claude/settings.json in the dead-hook check (same as --hooks-global).

Config file resolution order: .ctxlintrc → .ctxlintrc.json in the project root. Use --config <path> to point elsewhere. CLI flags override config fields.

CLI flags override config file settings. Use --config <path> to load a config from a custom location.

Ignore file (.ctxlintignore)

A .ctxlintignore file in the project root suppresses findings without touching .ctxlintrc. Each line is one rule, checkName [fileGlob] [# reason]:

# Blank lines and lines starting with # are skipped.
paths                    # every paths finding, in every file
tokens CLAUDE.md         # tokens findings in CLAUDE.md only
redundancy .claude/**    # redundancy findings in files under .claude/
  • checkName is a name from the Available checks list under Options (paths, tokens, mcp-security, ...), not a rule ID. A name that is not a check is not rejected: the rule never matches, so it is reported as never fired.

  • fileGlob is optional. Without one, the rule covers every file. With one, it covers only findings in files whose path matches — the project-relative path ctxlint prints, with forward slashes on every platform, and dotfiles included. Cross-file findings from contradictions and redundancy/duplicate-content are reported against the path (project); match them with that literal (contradictions (project)).

  • # reason needs a space before the #. In paths#legacy, the whole token is read as the check name. Only the first two tokens are read, so there is no message regex here; use ignoreRules for that.

  • Rules with a glob are applied first, in file order, then rules without one together with ignoreRules. A finding is dropped by the first rule that matches it.

  • Dropped counts, rules that dropped nothing, and rules without a reason are listed in the same "Ignore rules" report as ignoreRules.

  • --no-ignore-file skips the file for a run; ignoreRules still apply. --watch re-lints when the file changes.

Use as MCP Server

ctxlint ships with an MCP server that exposes seven tools (ctxlint_audit, ctxlint_mcp_audit, ctxlint_session_audit, ctxlint_skill_audit, ctxlint_validate_path, ctxlint_token_report, ctxlint_fix). All read-only tools declare annotations so MCP clients can skip confirmation dialogs.

Launch it with the serve subcommand (or the equivalent --mcp-server flag, kept for back-compat):

npx -y @yawlabs/ctxlint@latest serve

With Claude Code

claude mcp add ctxlint -- npx -y @yawlabs/ctxlint@latest serve

With .mcp.json (Claude Code project config, Cursor, Windsurf)

Create .mcp.json in your project root:

macOS / Linux / WSL:

{
  "mcpServers": {
    "ctxlint": {
      "command": "npx",
      "args": ["-y", "@yawlabs/ctxlint@latest", "serve"]
    }
  }
}

Windows:

{
  "mcpServers": {
    "ctxlint": {
      "command": "cmd",
      "args": ["/c", "npx", "-y", "@yawlabs/ctxlint@latest", "serve"]
    }
  }
}

Tip: This file is safe to commit — it contains no secrets.

With VS Code / GitHub Copilot

Add to .vscode/mcp.json:

{
  "servers": {
    "ctxlint": {
      "command": "npx",
      "args": ["-y", "@yawlabs/ctxlint@latest", "serve"]
    }
  }
}

With Claude Desktop

Add to your Claude Desktop config (claude_desktop_config.json):

{
  "mcpServers": {
    "ctxlint": {
      "command": "npx",
      "args": ["-y", "@yawlabs/ctxlint@latest", "serve"]
    }
  }
}

JSON Output

npx @yawlabs/ctxlint@latest --format json

Returns structured JSON with all file results, issues, and summary — useful for building integrations or dashboards.

Specifications

ctxlint is the reference implementation of four open specifications for linting AI agent interfaces. These specs are tool-agnostic — any linter, IDE extension, or CI system can implement them.

Spec

What it covers

AI Context File Linting Spec

43 rules for validating context files (CLAUDE.md, .cursorrules, AGENTS.md, etc.) across 16 clients. Covers file formats, frontmatter schemas, path/command validation, staleness, token budgets, redundancy, and contradictions.

MCP Config Linting Spec

29 rules for validating MCP server configs (.mcp.json, .cursor/mcp.json, .vscode/mcp.json, etc.) across 8 clients. Covers schema validation, hardcoded secrets, env var syntax, deprecated transports, and cross-file consistency.

Agent Session Linting Spec

13 rules for auditing agent session data (history, memory) across 8 agents. Covers cross-project secret consistency, config drift, stale memory, and loop detection.

Agent Skill Linting Spec

5 rules for auditing Claude Code skill (SKILL.md) and agent (.md) definitions under ~/.claude. Covers frontmatter presence, broken refs, trigger-phrase collisions, orphaned skills, and dead tool restrictions. (v1, experimental)

All specs include machine-readable rule catalogs for programmatic consumption:

Also By Yaw Labs

  • Yaw — The AI-native terminal

License

MIT

Follow @YawLabs on X

Tool Schema Changelog

Recent tool additions, removals, and schema changes observed during successful MCP inspections.

Loading tool schema changelog…

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