Reactome MCP Server
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| search_pathwaysC | Search for biological pathways by name, description, or keywords |
| get_pathway_detailsC | Get comprehensive information about a specific pathway |
| find_pathways_by_geneC | Find all pathways containing a specific gene or protein |
| find_pathways_by_diseaseC | Find disease-associated pathways and mechanisms |
| get_pathway_hierarchyC | Get hierarchical structure and parent/child relationships for a pathway |
| get_pathway_participantsC | Get all molecules (proteins, genes, compounds) participating in a pathway |
| get_pathway_reactionsC | Get all biochemical reactions within a pathway |
| get_protein_interactionsC | Get protein-protein interactions within pathways |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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