ProteinAtlas MCP Server

Describes the environment variables required to run the server.

Name	Required	Description	Default
No arguments

Server capabilities have not been inspected yet.

Functions exposed to the LLM to take actions

Name	Description
search_proteinsC	Search Human Protein Atlas for proteins by name, gene symbol, or description
get_protein_infoB	Get detailed information for a specific protein by gene symbol
get_protein_by_ensemblC	Get protein information using Ensembl gene ID
get_tissue_expressionC	Get tissue-specific expression data for a protein
search_by_tissueC	Find proteins highly expressed in specific tissues
get_blood_expressionC	Get blood cell expression data for a protein
get_brain_expressionC	Get brain region expression data for a protein
get_subcellular_locationC	Get subcellular localization data for a protein
search_by_subcellular_locationC	Find proteins localized to specific subcellular compartments
get_pathology_dataB	Get cancer and pathology data for a protein
search_cancer_markersC	Find proteins associated with specific cancers or with prognostic value
get_antibody_infoB	Get antibody validation and staining information for a protein
advanced_searchC	Perform advanced search with multiple filters and criteria
batch_protein_lookupC	Look up multiple proteins simultaneously
compare_expression_profilesC	Compare expression profiles between multiple proteins
get_protein_classesC	Get protein classification and functional annotation data

Interactive templates invoked by user choice

Name	Description
No prompts

Contextual data attached and managed by the client

Name	Description
No resources

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