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by Anselmoo

mcp-ai-agent-guidelines

npm version License: MIT Node ≥22.7.5 CI

CAUTION

Experimental / Early Stage: This research demonstrator project references third‑party models, tools, pricing, and docs that evolve quickly. Treat outputs as recommendations and verify against official docs and your own benchmarks before production use.

A TypeScript ESM MCP server exposing 20 public instruction tools and 7 utility tools, backed by 102 internal skills across 18 domain families — from requirements discovery and code quality through governance, resilience, and physics-inspired analysis.

📖 Full documentation on GitHub Pages


Table of Contents


Related MCP server: MCP Server TypeScript

Requirements

Runtime

Version

Node.js

≥ 22.7.5

npm

≥ 10.0.0


Installation

npx -y mcp-ai-agent-guidelines@latest

Global install

npm install -g mcp-ai-agent-guidelines

# MCP stdio server entrypoint
mcp-ai-agent-guidelines

# Interactive CLI
mcp-cli info

Local install (monorepo / project dependency)

npm install mcp-ai-agent-guidelines

VS Code Integration (One-Click)

Click a badge below to add this MCP server directly to VS Code (User Settings → mcp.servers):

Install with NPX in VS Code Install with NPX in VS Code Insiders Install with Docker in VS Code Install with Docker in VS Code Insiders

Or add manually to User Settings JSON:

{
  "mcp": {
    "servers": {
      "ai-agent-guidelines": {
        "command": "npx",
        "args": ["-y", "mcp-ai-agent-guidelines@latest"]
      }
    }
  }
}

Using Docker:

{
  "mcp": {
    "servers": {
      "ai-agent-guidelines": {
        "command": "docker",
        "args": ["run", "--rm", "-i", "ghcr.io/anselmoo/mcp-ai-agent-guidelines:latest"]
      }
    }
  }
}

MCP Server Configuration

Add the server to your MCP host config. The entry-point is dist/index.js and communicates over stdin/stdout.

Claude Desktop (~/Library/Application Support/Claude/claude_desktop_config.json)

IMPORTANT

Claude Desktop spawns the server with a different working directory than your project. SetMCP_WORKSPACE_ROOT to the absolute path of the project you want the server to write state into.

{
  "mcpServers": {
    "ai-agent-guidelines": {
      "command": "npx",
      "args": ["-y", "mcp-ai-agent-guidelines@latest"],
      "env": {
        "MCP_WORKSPACE_ROOT": "/absolute/path/to/your/project"
      }
    }
  }
}

VS Code (.vscode/mcp.json or user settings)

{
  "servers": {
    "ai-agent-guidelines": {
      "type": "stdio",
      "command": "npx",
      "args": ["-y", "mcp-ai-agent-guidelines@latest"],
      "env": {
        "MCP_WORKSPACE_ROOT": "${workspaceFolder}"
      }
    }
  }
}

From local build

{
  "mcpServers": {
    "ai-agent-guidelines": {
      "command": "node",
      "args": ["/path/to/repo/dist/index.js"]
    }
  }
}

CLI Usage

An interactive CLI wizard is included for standalone use outside an MCP host. The published package exposes two entrypoints:

  • mcp-ai-agent-guidelines — MCP stdio server entrypoint for editors and MCP hosts

  • mcp-cli — interactive CLI for onboarding, orchestration, and diagnostics

# Project onboarding
mcp-cli onboard init

# Re-open the orchestration editor
mcp-cli orchestration edit

# Quick re-entry for environment + model fleet only
mcp-cli orchestration edit --quick

# Direct skill invocation
mcp-cli --skill core-prompt-engineering --request "Write a system prompt for a coding assistant"

Instruction-tool input schema — the public instruction workflows share this shape:

{
  request: string;        // required — the task description
  context?: string;       // optional — background context
  options?: object;       // optional — skill-specific overrides
}

Configuration Files

  • .mcp-ai-agent-guidelines/config/orchestration.toml — primary orchestration authority (local, not tracked in git)

  • src/config/orchestration-defaults.ts — builtin bootstrap defaults used to auto-create the workspace config in advisory mode when orchestration.toml is absent

First-time runs auto-create orchestration.toml from builtin advisory defaults, including semantic role placeholders so routing can proceed before model discovery. Run mcp-cli onboard init to customize the setup or mcp-cli orchestration edit to reopen the interactive editor.


Features

  • 20 public instruction tools exposed through the MCP instruction surface

  • 7 public utility tools for workspace, memory, session, snapshot, orchestration, model-discovery, and visualization operations (before any HIDDEN_TOOLS filtering)

  • 102 internal skills across 18 domain prefixes — see Skill Taxonomy

  • Physics-inspired analysis: 15 quantum-mechanics (qm-*) + 15 general-relativity (gr-*) skills

  • Bio-inspired adaptive routing: ACO, Hebbian, Slime-mould, Quorum, Homeostatic, Clone-Mutate, Replay

  • Governance layer: prompt-injection hardening, PII guardrails, policy validation, regulated-workflow design

  • Model orchestration guidance: 5 multi-model patterns (parallel critique, draft-review, majority vote, cascade, free triple)

  • Zero runtime LLM calls — advisory outputs; wire a concrete executor to enable real LLM dispatch

  • xstate v5 state-machine orchestration built-in

  • graphology graph routing for topological skill sequencing


Public MCP Surface

ListTools currently exposes 27 tools total:

Category

Count

Tools

Instruction (workflow)

17

meta-routing, bootstrap, implement, refactor, debug, testing, design, review, research, orchestrate, adapt, resilience, evaluate, prompt-engineering, plan, document, govern

Instruction (discovery)

3

enterprise, physics-analysis, onboard_project

Utility

7

agent-workspace, agent-memory, agent-session, agent-snapshot, orchestration-config, model-discover, graph-visualize

The 102 skill definitions are internal workflow assets — not individually exposed as MCP tools. See docs for full tool reference.


Skill Taxonomy

Skills are organised under 18 domain-specific prefixes:

Prefix

Domain

Count

req-

Requirements Discovery

4

orch-

Orchestration

4

doc-

Documentation

4

qual-

Code Analysis & Quality

5

synth-

Research & Synthesis

4

flow-

Workflow

3

eval-

Evaluation & Benchmarking

5

debug-

Debugging

4

strat-

Strategy & Decision Making

4

arch-

Architecture Design

4

prompt-

Prompting

4

adapt-

Bio-inspired Adaptive Routing

5

bench-

Advanced Evals

3

lead-

Leadership & Enterprise

7

resil-

Resilience & Self-repair

5

gov-

Safety & Governance

7

qm-

Quantum Mechanics metaphors

15

gr-

General Relativity metaphors

15

Physics skills (qm-*, gr-*) require explicit justification before invocation. Route through the physics-analysis instruction first.

Full taxonomy details: docs/architecture/03-skill-graph.md.


Instruction Workflows

20 mission-driven instruction workflows orchestrate internal skills into complete task flows:

Instruction

Purpose

meta-routing

Master routing — choose which instruction to invoke

bootstrap

Scope clarification and requirements extraction

implement

Build new features end-to-end

refactor

Improve existing code safely

debug

Diagnose and fix problems

testing

Write, run, and verify tests

design

Architecture and system design

review

Code quality and security review

research

Synthesis, comparison, recommendations

orchestrate

Compose multi-agent workflows

adapt

Bio-inspired adaptive routing

resilience

Self-healing and fault tolerance

evaluate

Benchmark and assess AI quality

prompt-engineering

Build, evaluate, optimise prompts

plan

Strategy, roadmap, sprint planning

document

Generate documentation artifacts

govern

Safety, compliance, guardrails

enterprise

Leadership and enterprise-scale AI strategy

physics-analysis

QM + GR physics-inspired codebase analysis

onboard_project

Session-start project orientation


Architecture

See docs/architecture/ for ADRs and full module layout. The entry-point is src/index.ts; instructions live in src/instructions/, skills in src/skills/, and generated tool definitions in src/generated/ (do not edit by hand).


Development

# Install dependencies
npm install

# Type-check
npm run type-check

# Build (tsc → dist/)
npm run build

# Watch mode
npm run dev

# Run MCP server
node dist/index.js

Code Quality

npm run check          # biome check (lint + format)
npm run check:fix      # auto-fix
npm run quality        # full suite: verify_matrix + type-check + workflow-docs + biome

Regenerate generated tool definitions after editing canonical registries or workflow specs

python3 scripts/generate-tool-definitions.py
npm run build

Verify skill/instruction coverage matrix (zero orphans required)

python3 scripts/verify_matrix.py

Testing

npm test                  # vitest run
npm run test:coverage     # vitest + v8 coverage (80% threshold)

Tests live both co-located with source (src/**/*.test.ts) and in src/tests/.

Published package note: the npm package ships dist/, README.md, and LICENSE. Repository-only source assets such as docs/, .github/, and scripts/ are development references, not package runtime files.


Environment Variables

Variable

Default

Description

HIDDEN_TOOLS

""

Comma-separated list of tool names to exclude from ListTools

LOG_LEVEL

"info"

Observability log level (debug, info, warn, error)

ALLOW_GOVERNANCE_SKILLS

unset / "false"

Must be true to allow gov-* skills through criticalSkillGuard

DISABLE_ADAPTIVE_ROUTING

unset / "false"

Set to true to hide routing-adapt and block adapt-* skills; enabled by default (opt-out model)

ALLOW_INTENSIVE_SKILLS

unset / "false"

Must be true to allow resource-intensive skills such as bench-eval-suite, eval-prompt-bench, qm-path-integral-historian, and gr-spacetime-debt-metric

ENABLE_PHYSICS_SKILLS

unset / "false"

Required by input validation when physics skills are not otherwise authorized; physics skills also require conventional-evidence schema validation

MCP_WORKSPACE_ROOT

unset

Absolute path to the project directory the server should write state into (.mcp-ai-agent-guidelines/). Required when using npx via Claude Desktop, Cursor, or Windsurf — these clients do not preserve the terminal's working directory. VS Code supports ${workspaceFolder}.

MCP_SLIM_MODE

unset / "false"

Set to true to expose only the minimal surface: task-bootstrap, meta-routing, and project-onboard (useful for low-context agents)

Skill gates

Skill execution is gated by environment variables above. Physics skills (qm-*, gr-*) additionally require ENABLE_PHYSICS_SKILLS=true and conventional-evidence input. Model availability is derived from .mcp-ai-agent-guidelines/config/orchestration.toml; strict_mode = false allows warnings-only, strict_mode = true blocks on missing models.


Auto Mode & Session Hooks

Long-running agent sessions (VS Code Copilot, Claude Code, Copilot CLI) can drift away from MCP tools after the first few exchanges. The session hooks mechanism counteracts this by injecting lightweight reminders at the IDE lifecycle boundaries.

What the hooks do

Hook

Trigger

Effect

SessionStart

New chat session begins

Reminds agent to call task-bootstrap / meta-routing first

PreToolUse

Before every tool call

Detects consecutive non-MCP calls; nudges agent to re-orient

Quick install

# VS Code / Copilot CLI (writes to ~/.copilot/hooks/)
mcp-cli hooks setup --client vscode

# Claude Code (writes to ~/.claude/)
mcp-cli hooks setup --client claude-code

# Inspect what will be written without touching the filesystem
mcp-cli hooks print --client vscode

Manual install

Copy the following JSON to ~/.copilot/hooks/mcp-ai-agent-guidelines-hooks.json:

{
  "hooks": {
    "SessionStart": [
      {
        "type": "command",
        "command": "mcp-ai-agent-guidelines hooks remind-session"
      }
    ],
    "PreToolUse": [
      {
        "type": "command",
        "command": "mcp-ai-agent-guidelines hooks remind-drift"
      }
    ]
  }
}

Routing guidance

The .agent/rules/ directory contains IDE-readable routing tables:

  • .agent/rules/default.md — universal symptom → tool pipeline table and anti-patterns

  • .agent/rules/copilot.md — VS Code Copilot-specific quick reference and session-start checklist

These files are automatically picked up by Copilot's custom instructions system and by Serena's hook integration layer.

NOTE

The published npm package doesnot include .agent/rules/. If you install from npm and want these routing rules, copy them from the GitHub repository into your workspace.


Contributing

Contributions welcome! See CONTRIBUTING.md for guidelines, code standards, and the skill/instruction development workflow.


License

MIT © 2025 Anselmoo

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license - permissive license
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quality - not tested
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