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Aditya-Khadye

mcp-clinical-doc-agent

by Aditya-Khadye
OverviewSchemaRelated ServersScoreDiscussions
Python
Local

Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault
ANTHROPIC_API_KEYNoOptional API key for Anthropic to use Claude Haiku 4.5 for summarization; if not set, falls back to deterministic template.

Capabilities

Features and capabilities supported by this server

CapabilityDetails
tools
{
  "listChanged": false
}
prompts
{
  "listChanged": false
}
resources
{
  "subscribe": false,
  "listChanged": false
}
experimental
{}

Tools

Functions exposed to the LLM to take actions

NameDescription
list_documentsA

List all clinical trial protocol documents available in the data directory.

Returns one entry per protocol with id, title, path, indication, and phase.
Use this tool first to discover what documents are available, then pass an
``id`` from the result to ``extract_entities`` or ``summarize_protocol``.
extract_entitiesA

Extract clinical entities (drugs, conditions, interventions, endpoints, populations).

If ``document_id`` is omitted, runs across every document and returns the combined set.
Each entity carries its source ``document_id`` so callers can group results.
cluster_adverse_eventsA

Identify and group adverse-event mentions across one or more protocols.

Returns clusters bucketed by body system (gastrointestinal, cardiovascular,
neurological, dermatological, hematological, hepatic, respiratory, infections,
metabolic, other). If ``document_ids`` is omitted, clusters across all protocols.
summarize_protocolA

Generate a structured summary of a single protocol.

Returns phase, indication, intervention, primary endpoint, planned enrollment,
adverse-event count, and a 3-4 sentence narrative. Uses Claude (Haiku) when
``ANTHROPIC_API_KEY`` is set; otherwise falls back to a deterministic template.

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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