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Server Configuration

Describes the environment variables required to run the server.

NameRequiredDescriptionDefault

No arguments

Tools

Functions exposed to the LLM to take actions

NameDescription
search_content

Semantic search across all manuscript content

find_related_sections

Find content semantically similar to given text

extract_themes

Cluster content into main themes/topics

track_concept_evolution

Show how concept is discussed across documents

find_gaps

Find terms mentioned but not explained

generate_outline

Create hierarchical outline from content

suggest_reorganization

Suggest better content organization

find_orphaned_sections

Find sections with no incoming links

validate_structure

Check heading hierarchy and section balance

analyze_link_graph

Visualize connections between documents

find_broken_links

Detect broken internal and external links

suggest_cross_references

Suggest where to add links between sections

trace_reference_chain

Follow concept through linked documents

check_terminology

Find inconsistent term usage

find_todos

Extract all TODO/FIXME/DRAFT markers

check_readability

Analyze readability metrics

find_duplicates

Find near-duplicate content

get_writing_stats

Overall project statistics

track_changes

Show what changed since timestamp

generate_progress_report

Create progress dashboard

recall_writing_session

Search writing session history by date range or query

get_session_context

Get detailed context for a specific file or concept from past sessions

list_writing_decisions

List writing decisions by file, type, or date range

mark_mistake

Record a writing mistake to avoid repeating it

search_similar_mistakes

Search for similar mistakes to avoid repeating them

set_requirement

Store a publisher or style requirement

get_requirements

Get all requirements or filter by type

add_style_decision

Record a style decision for consistency

track_file_evolution

Show how a file evolved through git commits with rationale

track_concept_evolution

Track how a concept's definition evolved over time

find_concept_contradictions

Detect contradictions in concept definitions across versions

link_commits_to_sessions

Link git commits to writing sessions for context

holistic_search

Unified search across all memory layers (content, decisions, mistakes, concepts, sessions, commits)

get_file_context

Get all context for a file (sessions, decisions, mistakes, commits)

check_before_edit

Check context before editing a file - get warnings about past mistakes, decisions, and requirements to maintain consistency

Prompts

Interactive templates invoked by user choice

NameDescription

No prompts

Resources

Contextual data attached and managed by the client

NameDescription

No resources

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