SPARQL MCP Server
by sib-swiss
- sparql-mcp
- src
- webapp
index.html•4.88 kB
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<head>
<meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>Chat Expasy</title>
<meta
name="description"
content="Assistant to navigate resources from the Swiss Institute of Bioinformatics (SIB)."
/>
<link rel="icon" type="image/png" href="/assets/sib-logo--jUM9mer.png" />
<!-- <link href="https://unpkg.com/@sib-swiss/chat-with-context/dist/style.css" rel="stylesheet" />
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<link rel="stylesheet" crossorigin href="/assets/index-C2ZLL9jG.css">
</head>
<!-- Demo chat webpage served by the SIB Expasy API -->
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<div class="flex flex-col h-screen w-full">
<nav class="flex justify-end">
<a
href="https://github.com/sib-swiss/sparql-llm"
target="_blank"
rel="noopener noreferrer"
class="text-black hover:text-black dark:text-white align-middle"
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<button
title="Source code on GitHub"
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<img src="data:image/svg+xml,%3csvg%20xmlns='http://www.w3.org/2000/svg'%20width='24'%20height='24'%20viewBox='0%200%2024%2024'%20fill='none'%20stroke='currentColor'%20stroke-width='2'%20stroke-linecap='round'%20stroke-linejoin='round'%20class='feather%20feather-github'%3e%3cpath%20d='M9%2019c-5%201.5-5-2.5-7-3m14%206v-3.87a3.37%203.37%200%200%200-.94-2.61c3.14-.35%206.44-1.54%206.44-7A5.44%205.44%200%200%200%2020%204.77%205.07%205.07%200%200%200%2019.91%201S18.73.65%2016%202.48a13.38%2013.38%200%200%200-7%200C6.27.65%205.09%201%205.09%201A5.07%205.07%200%200%200%205%204.77a5.44%205.44%200%200%200-1.5%203.78c0%205.42%203.3%206.61%206.44%207A3.37%203.37%200%200%200%209%2018.13V22'%3e%3c/path%3e%3c/svg%3e" alt="GitHub logo" />
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</a>
</nav>
<div class="text-left text-sm mb-5 prose max-w-3xl mx-auto pb-5 border-b">
<h2 class="text-xl text-center font-semibold border-b pb-2">
Ask Expasy
<div
class="inline-block ml-3 px-3 py-1 bg-red-600 text-white text-sm font-semibold rounded-full justify-center items-center"
>
Beta
</div>
</h2>
<p>
<strong>ExpasyGPT</strong> is reshaping how researchers explore life science data, streamlining searches
across the <a href="https://www.sib.swiss/">SIB Swiss Institute of Bioinformatics</a>’ databases (learn more
<a href="https://www.expasy.org/about-chat">here</a>). This AI-driven tool is powered by metadata and example
queries from SPARQL endpoints like:
</p>
<ul style="list-style: inside">
<li>
<a href="http://www.uniprot.org/uniprot/" target="_blank">UniProt</a>, an expertly curated database of
proteins
</li>
<li><a href="https://omabrowser.org/oma/home/" target="_blank">OMA</a>, the orthologous matrix</li>
<li>
<a href="https://www.bgee.org/" target="_blank">Bgee</a>, an expertly curated gene expression database
</li>
<li>
<a href="https://www.rhea-db.org/" target="_blank">Rhea</a>, an expertly curated database of biochemical
reactions
</li>
<li>
<a href="http://www.swisslipids.org/#/" target="_blank">SwissLipids</a>, an expertly curated database of
lipids.
</li>
</ul>
<p>
As the service evolves, it will integrate additional endpoints from the
<a href="https://www.expasy.org/search/SPARQL" target="_blank">SIB Knowledge Graph</a>.
</p>
<p>
<strong>We value your input!</strong> For any questions or suggestions, feel free to reach out to the
<a href="https://www.expasy.org/contact" target="_blank">Expasy helpdesk</a>.
</p>
</div>
<div class="flex-grow mx-5">
<chat-with-context
chat-endpoint="http://127.0.0.1:8000/chat"
model="openrouter/anthropic/claude-sonnet-4"
examples="Which resources are available at the SIB?,How can I get the HGNC symbol for the protein P68871?,What are the rat orthologs of the human TP53?,Where is expressed the gene ACE2 in human?,Anatomical entities where the INS zebrafish gene is expressed and its gene GO annotations,List the genes in primates orthologous to genes expressed in the fruit fly eye"
>
</chat-with-context>
</div>
</div>
</body>
</html>
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