sparql-mcp.json•2.5 kB
{
"endpoints": [
{
"label": "UniProt",
"endpoint_url": "https://sparql.uniprot.org/sparql/",
"description": "UniProt is a comprehensive resource for protein sequence and annotation data.",
"void_file": "../sparql-llm/tests/void_uniprot.ttl"
},
{
"label": "Orthology MAtrix (OMA)",
"endpoint_url": "https://sparql.omabrowser.org/sparql/",
"description": "OMA is a method and database for the inference of orthologs among complete genomes.",
"homepage_url": "https://omabrowser.org/"
},
{
"label": "HAMAP",
"endpoint_url": "https://hamap.expasy.org/sparql/",
"description": "HAMAP is a system for the classification and annotation of protein sequences. It consists of a collection of manually curated family profiles for protein classification, and associated, manually created annotation rules that specify annotations that apply to family members.",
"homepage_url": "https://hamap.expasy.org/"
},
{
"label": "SwissLipids",
"endpoint_url": "https://beta.sparql.swisslipids.org/",
"description": "SwissLipids is an expert curated resource that provides a framework for the integration of lipid and lipidomic data with biological knowledge and models.",
"homepage_url": "https://www.swisslipids.org"
},
{
"label": "Rhea",
"endpoint_url": "https://sparql.rhea-db.org/sparql/",
"description": "Rhea is an expert-curated knowledgebase of chemical and transport reactions of biological interest - and the standard for enzyme and transporter annotation in UniProtKB.",
"homepage_url": "https://www.rhea-db.org/"
},
{
"label": "Cellosaurus",
"endpoint_url": "https://sparql.cellosaurus.org/sparql",
"description": "Cellosaurus is a knowledge resource on cell lines.",
"homepage_url": "https://cellosaurus.org/"
},
{
"label": "OrthoDB",
"endpoint_url": "https://sparql.orthodb.org/sparql/",
"description": "The hierarchical catalog of orthologs mapping genomics to functional data",
"homepage_url": "https://www.orthodb.org/"
},
{
"label": "METRIN-KG",
"endpoint_url": "https://kg.earthmetabolome.org/metrin/api/",
"description": "The MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG) is a project that aims to create a digital representation of chemo- and biodiversity, from botanical collections to the global scale in wild ecosystems."
}
]
}