import pytest
from fastmcp import Client
from pathlib import Path
import nest_asyncio
# Apply nest_asyncio at module level
nest_asyncio.apply()
@pytest.mark.asyncio
async def test_activity(mcp):
# Pass the server directly to the Client constructor
testfile = Path(__file__).parent / "data/maynard2020_3k.h5ad"
async with Client(mcp) as client:
result = await client.call_tool("io_read", {"request":{"filename": testfile}})
assert "AnnData" in result[0].text
# result = await client.call_tool(
# "ul_load_gene_position",
# {"request":{"file": Path(__file__).parent / "data/gene_pos.csv"}}
# )
# assert "success" in result[0].text
# result = await client.call_tool(
# "tl_infercnv", {'request': {'reference_key': 'cell_type',
# 'reference_cat': ['B cell', 'Macrophage', 'Mast cell', 'Monocyte', 'NK cell', 'Plasma cell', 'T cell CD4', 'T cell CD8', 'T cell regulatory', 'mDC', 'pDC']}}
# )
# assert "adata_cnv" in result[0].text
# result = await client.call_tool(
# "tl_pca", {'request': {'n_comps': 50, 'layer': None, 'zero_center': 'false', 'svd_solver': 'arpack',
# 'mask_var': None, 'chunked': False, 'chunk_size': None}, 'adinfo': {'sampleid': 'adata_cnv', 'adtype': 'cnv'}}
# )
# assert "adata_cnv" in result[0].text
# result = await client.call_tool(
# "pp_neighbors", {'request': {'n_neighbors': 15, 'n_pcs': None, 'use_rep': 'X_pca', 'knn': True, 'method': 'umap', 'transformer': None,
# 'metric': 'euclidean', 'metric_kwds': {}, 'random_state': 0, 'key_added': 'cnv_neighbors'}, 'adinfo': {'sampleid': 'adata_cnv', 'adtype':
# 'cnv'}}
# )
# assert "adata_cnv" in result[0].text
# result = await client.call_tool(
# "tl_leiden", {'request': {'key_added': 'cnv_leiden',
# 'neighbors_key': 'cnv_neighbors', 'flavor': 'igraph'}, 'adinfo': {'sampleid': 'adata_cnv',
# 'adtype': 'cnv'}}
# )
# assert "adata_cnv" in result[0].text
