Infercnv-MCP

""" Preprocessing functions for infercnvpy-mcp. """ import os import inspect import scanpy as sc from fastmcp import FastMCP , Context from fastmcp.exceptions import ToolError from scmcp_shared.server.preset.pp import ScanpyPreprocessingMCP from scmcp_shared.util import update_mcp_args pp_mcp = ScanpyPreprocessingMCP( include_tools=["neighbors"] ).mcp update_mcp_args( pp_mcp, { "neighbors": { "use_rep": {"default": "cnv_pca"}, "key_added": {"default": "cnv_neighbors"}, "sampleid": {"default": "adata_cnv"}, "adtype": {"default": "cnv"} } } )