Notepad++ MCP Server

# Serena MCP - Complete Installation & Usage Guide **Date:** 2025-10-09 **Status:** Production-ready FOSS project **GitHub:** https://github.com/oraios/serena **Stars:** 9.8k+ (very active!) --- ## 🎯 What is Serena? **Serena** is a FREE, open-source MCP server that makes AI assistants (Claude, Cursor, etc.) WAY smarter at coding by giving them **semantic code understanding** - not just text reading. ### The Problem Serena Solves **Without Serena:** - AI reads your ENTIRE codebase every time (wastes tokens 💸) - AI only sees text, not code structure (like class relationships, function calls) - Large projects hit token limits fast - AI can't find specific functions/classes efficiently **With Serena:** - AI reads ONLY what it needs (70% token savings! 🎉) - AI understands code semantically (via Language Server Protocol) - AI can search by meaning: "find all authentication functions" - Creates project "memories" in `.serena/memories/` for context - Works like a real IDE with symbol navigation, references, etc. ### How It Works 1. **First run (Onboarding):** - Serena scans your project - Creates index of all code symbols (classes, functions, etc.) - Generates "memory" files in `.serena/memories/` with project understanding - Starts language servers (Python, TypeScript, Java, etc.) 2. **During conversation:** - AI asks Serena specific questions like "find_symbol", "get_references" - Serena uses language servers to get exact answers - Only relevant code is sent to AI (not the whole project) - AI has semantic understanding (not just text search) 3. **Automatic optimization:** - Serena caches results - Updates indexes when files change - Manages memory files automatically --- ## 📋 Supported Languages **Fully Supported (Auto-configured):** - Python (pylsp) - JavaScript/TypeScript (typescript-language-server) - Rust (rust-analyzer) - Go (gopls) - Java, C#, C++, and 8+ more **Works Best For:** - Large projects (10,000+ lines) - Multi-file codebases with complex relationships - Projects with good structure (not single-file scripts) --- ## 🔧 Installation Guide ### Prerequisites **Required:** - Python 3.10+ (you have 3.13 ✅) - `uv` package manager (Python's new fast package tool) **Install uv (Windows PowerShell):** ```powershell # Run this command powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex" # Verify installation uv --version ``` **Or via winget:** ```powershell winget install astral-sh.uv ``` --- ## 🚀 Quick Setup (Recommended Method) ### Method 1: Direct Run (No Clone Needed) ⭐ EASIEST This uses `uvx` to run Serena directly from GitHub: **For Claude Desktop:** 1. Open Claude Desktop config: ``` C:\Users\sandr\AppData\Roaming\Claude\claude_desktop_config.json ``` 2. Add Serena entry: ```json { "mcpServers": { "serena": { "command": "uvx", "args": [ "--from", "git+https://github.com/oraios/serena", "serena", "start-mcp-server", "--context", "ide-assistant" ], "env": { "PYTHONUNBUFFERED": "1" } } } } ``` 3. Restart Claude Desktop **completely** (quit from system tray!) 4. Verify: Look for hammer icon 🔨 next to your message box **For Cursor:** 1. Open/create Cursor MCP config: ``` C:\Users\sandr\.cursor\mcp.json ``` 2. Add Serena entry: ```json { "mcpServers": { "serena": { "command": "uvx", "args": [ "--from", "git+https://github.com/oraios/serena", "serena", "start-mcp-server", "--context", "ide-assistant" ] } } } ``` 3. Restart Cursor --- ### Method 2: Clone & Run (More Control) **For Sandra's setup:** ```powershell # Navigate to repos Set-Location "d:\dev\repos" # Clone Serena git clone https://github.com/oraios/serena Set-Location "d:\dev\repos\serena" # Test it works uv run serena start-mcp-server --help ``` **Claude Desktop config:** ```json { "mcpServers": { "serena": { "command": "uv", "args": [ "run", "--directory", "d:\\dev\\repos\\serena", "serena", "start-mcp-server", "--context", "ide-assistant" ], "env": { "PYTHONUNBUFFERED": "1" } } } } ``` --- ## 🎮 Using Serena ### First Time in a Project When you start working on a project, Serena needs to "onboard": **In Claude/Cursor, say:** ``` "Run onboarding for this project" ``` Or just start coding naturally: ``` "Analyze the authentication flow in this project" ``` Serena will: 1. Scan your project structure 2. Create `.serena/memories/` folder 3. Generate memory files (project structure, key components, etc.) 4. Index all code symbols 5. Start language servers **This takes 30 seconds to 2 minutes** depending on project size. ### After Onboarding Serena is ready! It has deep understanding of your code. **What You Can Ask:** **Code Navigation:** ``` "Find all functions that handle user authentication" "Show me where UserService is defined" "Find all references to the authenticate() method" "List all classes in the auth module" ``` **Code Analysis:** ``` "Explain the relationship between UserController and UserService" "What does the payment processing flow look like?" "Find potential security issues in the login code" "Analyze code complexity in the database layer" ``` **Code Editing:** ``` "Add logging to all API endpoints" "Refactor the UserService to use dependency injection" "Fix all TODO comments in the project" "Add error handling to database queries" ``` **Project Understanding:** ``` "What does this project do?" "Where is the main entry point?" "How is authentication implemented?" "Show me the API structure" ``` ### Serena's Tools (What It Can Do) Serena provides these tools to the AI: - `get_symbol_definition` - Get code for a specific symbol - `get_symbol_references` - Find all uses of a symbol - `search_symbols` - Search for symbols by name/pattern - `find_patterns` - Search code by regex pattern - `list_memories` - Show available memory files - `read_memory` - Read a memory file - `read_file` - Read any project file - `replace_lines` - Edit code by line ranges - `replace_symbol_body` - Replace entire function/class - `list_dir` - Browse project structure - `onboarding` - Initialize project understanding - `prepare_for_new_conversation` - Continue with context **You don't call these directly!** The AI decides when to use them. --- ## 📊 The Dashboard (Very Cool!) Serena runs a **local web dashboard** for monitoring: **Access:** http://localhost:24282/dashboard/index.html **Shows:** - All tool calls Serena makes - Language server status - Project memory files - Token usage estimates - Real-time logs **Auto-opens** when you start Serena (unless disabled) --- ## ⚙️ Configuration ### Project Config (.serena/serena_config.yml) After first run, edit `.serena/serena_config.yml` in your project: ```yaml # Ignore certain directories (important!) ignored_dirs: - node_modules - .venv - venv - __pycache__ - dist - build - .git # Read-only mode (no editing) read_only: false # Disable dangerous shell commands disabled_tools: - execute_shell_command # Language-specific settings languages: python: language_server: "pylsp" typescript: language_server: "typescript-language-server" ``` ### Contexts (Behavior Modes) Serena has different "contexts" for different use cases: - `desktop-app` - Default for Claude Desktop - `ide-assistant` - Best for Cursor/IDEs (recommended) - `agent` - For autonomous operation - `planning` - Focus on analysis - `editing` - Optimize for code changes **Set context in config:** ```json "args": [ "serena", "start-mcp-server", "--context", "ide-assistant" ] ``` --- ## 🛡️ Safety & Best Practices ### Critical Warnings 1. **Backup your work!** Serena can edit code. - Use git: `git add -A && git commit -m "before serena"` 2. **Inspect commands:** When Serena wants to run shell commands, CHECK THEM! 3. **Use read-only mode** if you only want analysis: ```yaml read_only: true ``` 4. **Ignore large folders:** Add to `ignored_dirs` or it will scan forever: ```yaml ignored_dirs: - node_modules - .venv - data - logs ``` ### Known Issues **Serena hangs on startup:** - Usually due to large virtual environments - **Fix:** Add venv folders to `ignored_dirs` - **Fix:** Delete `.serena/` folder and restart **Language server not starting:** - Check Serena dashboard logs - Serena auto-installs servers, but might fail - **Fix:** Manually install (e.g., `pip install python-lsp-server`) **Token limits hit:** - Serena helps but doesn't eliminate limits - **Fix:** Use more focused prompts - **Fix:** Work on smaller modules at a time --- ## 📈 Performance Tips ### Maximize Token Savings 1. **Good project structure:** - Well-organized folders - Clear naming conventions - Serena navigates better = fewer tokens 2. **Use memories:** ``` "Read the memories for this project first" ``` Then ask your question 3. **Specific prompts:** ``` ❌ "Improve this project" ✅ "Refactor the UserService class to use interfaces" ``` 4. **Let Serena prepare:** ``` "Run prepare_for_new_conversation" ``` Before starting new chat ### Speed Up Onboarding - Configure `ignored_dirs` BEFORE first run - Start with smaller modules - Use `.gitignore` (Serena respects it) --- ## 💡 Real-World Examples ### Example 1: Bug Hunting ``` You: "Find all database queries that don't have error handling" Serena: *searches symbols, analyzes code* Serena: "Found 5 instances in UserRepository, OrderRepository..." You: "Add try-catch blocks to all of them" Serena: *edits files with replace_symbol_body* ``` ### Example 2: Refactoring ``` You: "The UserService class is too large. Split it into UserAuthService and UserProfileService" Serena: *analyzes dependencies, creates new files, updates imports* ``` ### Example 3: Understanding New Project ``` You: "I just inherited this codebase. Explain the architecture" Serena: *reads memories, analyzes structure* Serena: "This is a 3-tier architecture with..." ``` --- ## 🎓 Advanced Usage ### Custom Memory Files You can manually add memory files to `.serena/memories/`: **Example:** `.serena/memories/deployment.md` ```markdown # Deployment Process 1. Run tests: npm test 2. Build: npm run build 3. Deploy: ./deploy.sh production Database migrations run automatically. ``` Serena will read this when relevant! ### Multiple Projects Each project gets its own `.serena/` folder with separate: - Memory files - Index - Configuration You can copy memory files between projects for consistency. ### Integration with Claude Code **Claude Code CLI** has special Serena integration: ```bash claude mcp add serena -- uvx --from git+https://github.com/oraios/serena serena start-mcp-server --context ide-assistant --project $(pwd) ``` This automatically configures Serena for the current directory! --- ## 🔧 Troubleshooting ### Serena Not Showing Up **Check:** 1. Config file syntax is valid JSON 2. You fully restarted the IDE (not just closed window!) 3. Look for hammer icon 🔨 in chat 4. Check IDE logs for MCP errors **Claude Desktop logs:** ``` C:\Users\sandr\AppData\Roaming\Claude\logs\ ``` **Cursor logs:** ``` %APPDATA%\Cursor\logs\ ``` ### Serena Hangs on Startup **Common causes:** - Scanning large `node_modules` or `venv` - Too many files **Fixes:** 1. Add to `.gitignore` (Serena respects it) 2. Configure `ignored_dirs` in `serena_config.yml` 3. Delete `.serena/` and restart ### Commands Not Working **Try:** ``` "Use the onboarding tool" "Use the find_symbol tool to search for UserService" ``` Be explicit about tool names! ### Out of Context Errors Even with Serena, you can hit limits on huge files. **Solutions:** - Work on smaller modules - Split large files - Use focused prompts - Start new conversation with `prepare_for_new_conversation` --- ## 📝 Summary: Serena Cheat Sheet **Installation:** ```powershell # Quick method Add to claude_desktop_config.json: { "serena": { "command": "uvx", "args": ["--from", "git+https://github.com/oraios/serena", "serena", "start-mcp-server", "--context", "ide-assistant"] } } ``` **First Use:** ``` "Run onboarding for this project" ``` **Common Commands:** ``` "Find all functions that..." "Show me where X is defined" "Refactor X to use Y" "Explain the architecture" "Add logging to all endpoints" ``` **Dashboard:** ``` http://localhost:24282/dashboard/index.html ``` **Memory Location:** ``` <your-project>/.serena/memories/ ``` **Config:** ``` <your-project>/.serena/serena_config.yml ``` --- ## 🎯 Is Serena Right for You? **YES, if:** - ✅ Working on medium/large projects (1000+ lines) - ✅ Multi-file codebases with structure - ✅ Want to save tokens/API costs - ✅ Need semantic code understanding - ✅ Projects in Python, JS/TS, Java, Rust, Go **MAYBE NOT, if:** - ❌ Single-file scripts - ❌ Very small projects (<100 lines) - ❌ Just need basic text editing - ❌ Don't want to manage another tool --- ## 🔗 Resources - **GitHub:** https://github.com/oraios/serena - **Issues:** https://github.com/oraios/serena/issues - **Changelog:** https://github.com/oraios/serena/releases - **Roadmap:** Check GitHub discussions --- **Built by:** Oraios AI **License:** MIT (Free Open Source) **Status:** Active development, 9.8k+ stars, production-ready --- **Try it!** It's free, open source, and can save you 70% of tokens. What's not to love? 🚀