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</span> </a> <nav class="md-nav" aria-label="Why This Tool?"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#comparison-mjherich-vs-dzivkovi" class="md-nav__link"> <span class="md-ellipsis"> Comparison: mjherich vs dzivkovi </span> </a> </li> <li class="md-nav__item"> <a href="#decision-dzivkovi" class="md-nav__link"> <span class="md-ellipsis"> Decision: dzivkovi </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#installation" class="md-nav__link"> <span class="md-ellipsis"> Installation </span> </a> <nav class="md-nav" aria-label="Installation"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#method-1-web-visualizer-recommended" class="md-nav__link"> <span class="md-ellipsis"> Method 1: Web Visualizer (Recommended) </span> </a> </li> <li class="md-nav__item"> <a href="#method-2-python-tools-for-analysis" class="md-nav__link"> <span class="md-ellipsis"> Method 2: Python Tools (For Analysis) </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#usage" class="md-nav__link"> <span class="md-ellipsis"> Usage </span> </a> <nav class="md-nav" aria-label="Usage"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#option-1-web-visualizer-quick-exploration" class="md-nav__link"> <span class="md-ellipsis"> Option 1: Web Visualizer (Quick Exploration) </span> </a> </li> <li class="md-nav__item"> <a href="#option-2-python-static-analysis-research-reports" class="md-nav__link"> <span class="md-ellipsis"> Option 2: Python Static Analysis (Research &amp; Reports) </span> </a> </li> <li class="md-nav__item"> <a href="#option-3-python-interactive-deep-analysis" class="md-nav__link"> <span class="md-ellipsis"> Option 3: Python Interactive (Deep Analysis) </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#finding-your-memory-file" class="md-nav__link"> <span class="md-ellipsis"> Finding Your Memory File </span> </a> <nav class="md-nav" aria-label="Finding Your Memory File"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#default-location-problematic" class="md-nav__link"> <span class="md-ellipsis"> Default Location (Problematic) </span> </a> </li> <li class="md-nav__item"> <a href="#recommended-configure-persistent-location" class="md-nav__link"> <span class="md-ellipsis"> Recommended: Configure Persistent Location </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#memory-file-format" class="md-nav__link"> <span class="md-ellipsis"> Memory File Format </span> </a> </li> <li class="md-nav__item"> <a href="#demo-data" class="md-nav__link"> <span class="md-ellipsis"> Demo Data </span> </a> </li> <li class="md-nav__item"> <a href="#technical-details" class="md-nav__link"> <span class="md-ellipsis"> Technical Details </span> </a> <nav class="md-nav" aria-label="Technical Details"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#web-visualizer" class="md-nav__link"> <span class="md-ellipsis"> Web Visualizer </span> </a> </li> <li class="md-nav__item"> <a href="#python-static-analysis" class="md-nav__link"> <span class="md-ellipsis"> Python Static Analysis </span> </a> </li> <li class="md-nav__item"> <a href="#python-interactive" class="md-nav__link"> <span class="md-ellipsis"> Python Interactive </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#workflow-examples" class="md-nav__link"> <span class="md-ellipsis"> Workflow Examples </span> </a> <nav class="md-nav" aria-label="Workflow Examples"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#workflow-1-quick-check-web" class="md-nav__link"> <span class="md-ellipsis"> Workflow 1: Quick Check (Web) </span> </a> </li> <li class="md-nav__item"> <a href="#workflow-2-research-analysis-python-static" class="md-nav__link"> <span class="md-ellipsis"> Workflow 2: Research Analysis (Python Static) </span> </a> </li> <li class="md-nav__item"> <a href="#workflow-3-deep-dive-python-interactive" class="md-nav__link"> <span class="md-ellipsis"> Workflow 3: Deep Dive (Python Interactive) </span> </a> </li> <li class="md-nav__item"> <a href="#workflow-4-memory-cleanup" class="md-nav__link"> <span class="md-ellipsis"> Workflow 4: Memory Cleanup </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#comparison-to-mjherichs-tool" class="md-nav__link"> <span class="md-ellipsis"> Comparison to mjherich's Tool </span> </a> </li> <li class="md-nav__item"> <a href="#troubleshooting" class="md-nav__link"> <span class="md-ellipsis"> Troubleshooting </span> </a> <nav class="md-nav" aria-label="Troubleshooting"> <ul class="md-nav__list"> <li class="md-nav__item"> <a href="#issue-file-not-found-when-running-python-scripts" class="md-nav__link"> <span class="md-ellipsis"> Issue: "File not found" when running Python scripts </span> </a> </li> <li class="md-nav__item"> <a href="#issue-matplotlib-building-font-cache" class="md-nav__link"> <span class="md-ellipsis"> Issue: Matplotlib "building font cache" </span> </a> </li> <li class="md-nav__item"> <a href="#issue-modulenotfounderror" class="md-nav__link"> <span class="md-ellipsis"> Issue: "ModuleNotFoundError" </span> </a> </li> <li class="md-nav__item"> <a href="#issue-web-visualizer-not-loading-memoryjson" class="md-nav__link"> <span class="md-ellipsis"> Issue: Web visualizer not loading memory.json </span> </a> </li> <li class="md-nav__item"> <a href="#issue-memory-file-in-temporary-npm-cache-location" class="md-nav__link"> <span class="md-ellipsis"> Issue: Memory file in temporary npm cache location </span> </a> </li> </ul> </nav> </li> <li class="md-nav__item"> <a href="#future-enhancements" class="md-nav__link"> <span class="md-ellipsis"> Future Enhancements </span> </a> </li> <li class="md-nav__item"> <a href="#related-tools" class="md-nav__link"> <span class="md-ellipsis"> Related Tools </span> </a> </li> <li class="md-nav__item"> <a href="#credits" class="md-nav__link"> <span class="md-ellipsis"> Credits </span> </a> </li> </ul> </nav> </div> </div> </div> <div class="md-content" data-md-component="content"> <article class="md-content__inner md-typeset"> <a href="https://github.com/prefrontal-systems/cortexgraph/edit/main/docs/memory-mcp-visualization.md" title="Edit this page" class="md-content__button md-icon" rel="edit"> <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M10 20H6V4h7v5h5v3.1l2-2V8l-6-6H6c-1.1 0-2 .9-2 2v16c0 1.1.9 2 2 2h4zm10.2-7c.1 0 .3.1.4.2l1.3 1.3c.2.2.2.6 0 .8l-1 1-2.1-2.1 1-1c.1-.1.2-.2.4-.2m0 3.9L14.1 23H12v-2.1l6.1-6.1z"/></svg> </a> <h1 id="memory-mcp-visualization-guide">Memory MCP Visualization Guide<a class="headerlink" href="#memory-mcp-visualization-guide" title="Permanent link">&para;</a></h1> <p><strong>Author</strong>: Scot Campbell <strong>Date</strong>: November 4, 2025 <strong>Tool</strong>: dzivkovi/mcp-memory-visualizer <strong>Installation Location</strong>: /Users/sc/GitHub/memory-visualizer</p> <h2 id="executive-summary">Executive Summary<a class="headerlink" href="#executive-summary" title="Permanent link">&para;</a></h2> <p>After comparing two memory visualization tools for Anthropic's memory.json format, I chose <strong>dzivkovi/mcp-memory-visualizer</strong> because it offers three complementary visualization modes:</p> <ol> <li>Web-based visualizer (zero installation, 100% private)</li> <li>Python static analysis (statistical + high-res graphs)</li> <li>Python interactive (browser-based with Python processing)</li> </ol> <p>The tool is installed and tested successfully.</p> <h2 id="why-this-tool">Why This Tool?<a class="headerlink" href="#why-this-tool" title="Permanent link">&para;</a></h2> <h3 id="comparison-mjherich-vs-dzivkovi">Comparison: mjherich vs dzivkovi<a class="headerlink" href="#comparison-mjherich-vs-dzivkovi" title="Permanent link">&para;</a></h3> <table> <thead> <tr> <th>Feature</th> <th>mjherich/memory-visualizer</th> <th>dzivkovi/mcp-memory-visualizer</th> </tr> </thead> <tbody> <tr> <td><strong>Installation</strong></td> <td>npm + dependencies</td> <td>None (web) OR pip (Python)</td> </tr> <tr> <td><strong>Tech Stack</strong></td> <td>React + TypeScript + D3.js + Vite</td> <td>D3.js (web) + NetworkX/PyVis (Python)</td> </tr> <tr> <td><strong>Stars</strong></td> <td>12</td> <td>0</td> </tr> <tr> <td><strong>Maintenance</strong></td> <td>Active (13 commits, last Aug 2025)</td> <td>Recent (4 commits, last Jun 2025)</td> </tr> <tr> <td><strong>Modes</strong></td> <td>1 (web app)</td> <td>3 (web + 2 Python)</td> </tr> <tr> <td><strong>Live Demo</strong></td> <td>memviz.herich.tech</td> <td>dzivkovi.github.io/mcp-memory-visualizer</td> </tr> <tr> <td><strong>Features</strong></td> <td>Interactive graph, search, filters</td> <td>Three modes: quick, statistical, deep</td> </tr> <tr> <td><strong>Best For</strong></td> <td>Interactive exploration</td> <td>Multiple use cases (exploration, analysis, research)</td> </tr> </tbody> </table> <h3 id="decision-dzivkovi">Decision: dzivkovi<a class="headerlink" href="#decision-dzivkovi" title="Permanent link">&para;</a></h3> <p><strong>Chosen: dzivkovi/mcp-memory-visualizer</strong></p> <p><strong>Reasons:</strong> 1. <strong>Three modes for different workflows</strong>: Web (quick), Python static (research), Python interactive (deep analysis) 2. <strong>Easier installation</strong>: Web version = zero install, Python version = <code>pip install -r requirements.txt</code> 3. <strong>Statistical analysis</strong>: NetworkX provides graph metrics (centrality, clusters, redundancy detection) 4. <strong>Export options</strong>: PNG (static), HTML (interactive), screenshots (web) 5. <strong>Simpler codebase</strong>: Single HTML file (web) + 2 Python scripts vs full React build system</p> <p>mjherich's tool is more polished (React + TypeScript, better UI), but dzivkovi's three-mode approach better serves different use cases.</p> <h2 id="installation">Installation<a class="headerlink" href="#installation" title="Permanent link">&para;</a></h2> <h3 id="method-1-web-visualizer-recommended">Method 1: Web Visualizer (Recommended)<a class="headerlink" href="#method-1-web-visualizer-recommended" title="Permanent link">&para;</a></h3> <p><strong>Zero installation required!</strong></p> <p>Visit: https://dzivkovi.github.io/mcp-memory-visualizer/</p> <p>Features: - Drag &amp; drop memory.json file - 100% private (all processing in browser) - Interactive graph with physics simulation - Search entities and observations - Color-coded entity types - Detail panel with relationships</p> <h3 id="method-2-python-tools-for-analysis">Method 2: Python Tools (For Analysis)<a class="headerlink" href="#method-2-python-tools-for-analysis" title="Permanent link">&para;</a></h3> <p>Already installed at: <code>/Users/sc/GitHub/memory-visualizer</code></p> <div class="highlight"><pre><span></span><code><a id="__codelineno-0-1" name="__codelineno-0-1" href="#__codelineno-0-1"></a><span class="c1"># If you need to reinstall:</span> <a id="__codelineno-0-2" name="__codelineno-0-2" href="#__codelineno-0-2"></a><span class="nb">cd</span><span class="w"> </span>~/GitHub <a id="__codelineno-0-3" name="__codelineno-0-3" href="#__codelineno-0-3"></a>git<span class="w"> </span>clone<span class="w"> </span>https://github.com/dzivkovi/mcp-memory-visualizer.git<span class="w"> </span>memory-visualizer <a id="__codelineno-0-4" name="__codelineno-0-4" href="#__codelineno-0-4"></a><span class="nb">cd</span><span class="w"> </span>memory-visualizer <a id="__codelineno-0-5" name="__codelineno-0-5" href="#__codelineno-0-5"></a>pip<span class="w"> </span>install<span class="w"> </span>-r<span class="w"> </span>requirements.txt </code></pre></div> <p>Dependencies installed: - networkx (graph analysis) - matplotlib (static visualization) - pyvis (interactive HTML output)</p> <h2 id="usage">Usage<a class="headerlink" href="#usage" title="Permanent link">&para;</a></h2> <h3 id="option-1-web-visualizer-quick-exploration">Option 1: Web Visualizer (Quick Exploration)<a class="headerlink" href="#option-1-web-visualizer-quick-exploration" title="Permanent link">&para;</a></h3> <ol> <li>Navigate to: https://dzivkovi.github.io/mcp-memory-visualizer/</li> <li>Locate your memory.json file (see "Finding Your Memory File" below)</li> <li>Drag &amp; drop the file into the browser</li> <li>Explore:</li> <li>Drag nodes to rearrange</li> <li>Zoom with mouse wheel</li> <li>Click nodes to see observations</li> <li>Search for entities</li> <li>View relationships in detail panel</li> </ol> <p><strong>Best for</strong>: Quick visualization, on-the-fly debugging, sharing with others</p> <h3 id="option-2-python-static-analysis-research-reports">Option 2: Python Static Analysis (Research &amp; Reports)<a class="headerlink" href="#option-2-python-static-analysis-research-reports" title="Permanent link">&para;</a></h3> <div class="highlight"><pre><span></span><code><a id="__codelineno-1-1" name="__codelineno-1-1" href="#__codelineno-1-1"></a><span class="nb">cd</span><span class="w"> </span>/Users/sc/GitHub/memory-visualizer <a id="__codelineno-1-2" name="__codelineno-1-2" href="#__codelineno-1-2"></a> <a id="__codelineno-1-3" name="__codelineno-1-3" href="#__codelineno-1-3"></a><span class="c1"># Run static analysis (generates PNG + terminal output)</span> <a id="__codelineno-1-4" name="__codelineno-1-4" href="#__codelineno-1-4"></a>python<span class="w"> </span>visualize_memory.py <a id="__codelineno-1-5" name="__codelineno-1-5" href="#__codelineno-1-5"></a> <a id="__codelineno-1-6" name="__codelineno-1-6" href="#__codelineno-1-6"></a><span class="c1"># Output:</span> <a id="__codelineno-1-7" name="__codelineno-1-7" href="#__codelineno-1-7"></a><span class="c1"># - memory_graph.png (300 DPI high-res graph)</span> <a id="__codelineno-1-8" name="__codelineno-1-8" href="#__codelineno-1-8"></a><span class="c1"># - Terminal: statistics, centrality, redundancy detection</span> </code></pre></div> <p><strong>Provides:</strong> - Network statistics (nodes, edges, connected components) - Centrality analysis (most connected entities) - Redundancy detection (similar entities, sparse nodes) - High-resolution graph (300 DPI)</p> <p><strong>Best for</strong>: Research papers, reports, quantitative analysis, finding optimization opportunities</p> <h3 id="option-3-python-interactive-deep-analysis">Option 3: Python Interactive (Deep Analysis)<a class="headerlink" href="#option-3-python-interactive-deep-analysis" title="Permanent link">&para;</a></h3> <div class="highlight"><pre><span></span><code><a id="__codelineno-2-1" name="__codelineno-2-1" href="#__codelineno-2-1"></a><span class="nb">cd</span><span class="w"> </span>/Users/sc/GitHub/memory-visualizer <a id="__codelineno-2-2" name="__codelineno-2-2" href="#__codelineno-2-2"></a> <a id="__codelineno-2-3" name="__codelineno-2-3" href="#__codelineno-2-3"></a><span class="c1"># Run interactive analysis (generates HTML)</span> <a id="__codelineno-2-4" name="__codelineno-2-4" href="#__codelineno-2-4"></a>python<span class="w"> </span>visualize_memory_interactive.py <a id="__codelineno-2-5" name="__codelineno-2-5" href="#__codelineno-2-5"></a> <a id="__codelineno-2-6" name="__codelineno-2-6" href="#__codelineno-2-6"></a><span class="c1"># Output:</span> <a id="__codelineno-2-7" name="__codelineno-2-7" href="#__codelineno-2-7"></a><span class="c1"># - memory_graph_interactive.html (opens in browser)</span> </code></pre></div> <p><strong>Provides:</strong> - Browser-based interactive visualization - Hover tooltips with full entity details - Physics-based node positioning - Zoom, pan, node dragging - HTML export for sharing</p> <p><strong>Best for</strong>: Deep analysis, presentations, sharing with collaborators</p> <h2 id="finding-your-memory-file">Finding Your Memory File<a class="headerlink" href="#finding-your-memory-file" title="Permanent link">&para;</a></h2> <h3 id="default-location-problematic">Default Location (Problematic)<a class="headerlink" href="#default-location-problematic" title="Permanent link">&para;</a></h3> <p>Anthropic's Memory MCP server stores memory.json by default in:</p> <div class="highlight"><pre><span></span><code><a id="__codelineno-3-1" name="__codelineno-3-1" href="#__codelineno-3-1"></a># macOS <a id="__codelineno-3-2" name="__codelineno-3-2" href="#__codelineno-3-2"></a>~/.cache/npm/_npx/[hash]/node_modules/@modelcontextprotocol/server-memory/dist/memory.json <a id="__codelineno-3-3" name="__codelineno-3-3" href="#__codelineno-3-3"></a> <a id="__codelineno-3-4" name="__codelineno-3-4" href="#__codelineno-3-4"></a># Windows <a id="__codelineno-3-5" name="__codelineno-3-5" href="#__codelineno-3-5"></a>C:\Users\[username]\AppData\Local\npm-cache\_npx\[hash]\node_modules\@modelcontextprotocol\server-memory\dist\memory.json </code></pre></div> <p><strong>Warning</strong>: This location is temporary and gets wiped during npm cache clears or package updates!</p> <h3 id="recommended-configure-persistent-location">Recommended: Configure Persistent Location<a class="headerlink" href="#recommended-configure-persistent-location" title="Permanent link">&para;</a></h3> <p>Edit Claude Desktop config to use a persistent location:</p> <p><strong>macOS</strong>: <code>~/Library/Application Support/Claude/claude_desktop_config.json</code> <strong>Windows</strong>: <code>%APPDATA%\Claude\claude_desktop_config.json</code></p> <div class="highlight"><pre><span></span><code><a id="__codelineno-4-1" name="__codelineno-4-1" href="#__codelineno-4-1"></a><span class="p">{</span> <a id="__codelineno-4-2" name="__codelineno-4-2" href="#__codelineno-4-2"></a><span class="w"> </span><span class="nt">&quot;mcpServers&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span> <a id="__codelineno-4-3" name="__codelineno-4-3" href="#__codelineno-4-3"></a><span class="w"> </span><span class="nt">&quot;memory&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span> <a id="__codelineno-4-4" name="__codelineno-4-4" href="#__codelineno-4-4"></a><span class="w"> </span><span class="nt">&quot;command&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;npx&quot;</span><span class="p">,</span> <a id="__codelineno-4-5" name="__codelineno-4-5" href="#__codelineno-4-5"></a><span class="w"> </span><span class="nt">&quot;args&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">[</span><span class="s2">&quot;-y&quot;</span><span class="p">,</span><span class="w"> </span><span class="s2">&quot;@modelcontextprotocol/server-memory&quot;</span><span class="p">],</span> <a id="__codelineno-4-6" name="__codelineno-4-6" href="#__codelineno-4-6"></a><span class="w"> </span><span class="nt">&quot;env&quot;</span><span class="p">:</span><span class="w"> </span><span class="p">{</span> <a id="__codelineno-4-7" name="__codelineno-4-7" href="#__codelineno-4-7"></a><span class="w"> </span><span class="nt">&quot;MEMORY_FILE_PATH&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;/Users/sc/Documents/claude-memory/memory.json&quot;</span> <a id="__codelineno-4-8" name="__codelineno-4-8" href="#__codelineno-4-8"></a><span class="w"> </span><span class="p">}</span> <a id="__codelineno-4-9" name="__codelineno-4-9" href="#__codelineno-4-9"></a><span class="w"> </span><span class="p">}</span> <a id="__codelineno-4-10" name="__codelineno-4-10" href="#__codelineno-4-10"></a><span class="w"> </span><span class="p">}</span> <a id="__codelineno-4-11" name="__codelineno-4-11" href="#__codelineno-4-11"></a><span class="p">}</span> </code></pre></div> <p><strong>Recommended locations (macOS):</strong> - <code>~/Documents/claude-memory/memory.json</code> - <code>~/Library/Application Support/claude-memory/memory.json</code> - <code>~/Dropbox/claude-memory/memory.json</code> (if you want cloud backup)</p> <p><strong>Note</strong>: Create the directory first!</p> <div class="highlight"><pre><span></span><code><a id="__codelineno-5-1" name="__codelineno-5-1" href="#__codelineno-5-1"></a>mkdir<span class="w"> </span>-p<span class="w"> </span>~/Documents/claude-memory </code></pre></div> <h2 id="memory-file-format">Memory File Format<a class="headerlink" href="#memory-file-format" title="Permanent link">&para;</a></h2> <p>Anthropic's memory.json uses JSONL format (one JSON object per line):</p> <div class="highlight"><pre><span></span><code><a id="__codelineno-6-1" name="__codelineno-6-1" href="#__codelineno-6-1"></a><span class="p">{</span><span class="nt">&quot;type&quot;</span><span class="p">:</span><span class="s2">&quot;entity&quot;</span><span class="p">,</span><span class="nt">&quot;name&quot;</span><span class="p">:</span><span class="s2">&quot;Python&quot;</span><span class="p">,</span><span class="nt">&quot;entityType&quot;</span><span class="p">:</span><span class="s2">&quot;technology&quot;</span><span class="p">,</span><span class="nt">&quot;observations&quot;</span><span class="p">:[</span><span class="s2">&quot;Used for data analysis&quot;</span><span class="p">,</span><span class="s2">&quot;Popular ML language&quot;</span><span class="p">]}</span> <a id="__codelineno-6-2" name="__codelineno-6-2" href="#__codelineno-6-2"></a><span class="p">{</span><span class="nt">&quot;type&quot;</span><span class="p">:</span><span class="s2">&quot;relation&quot;</span><span class="p">,</span><span class="nt">&quot;from&quot;</span><span class="p">:</span><span class="s2">&quot;Python&quot;</span><span class="p">,</span><span class="nt">&quot;to&quot;</span><span class="p">:</span><span class="s2">&quot;Data Science&quot;</span><span class="p">,</span><span class="nt">&quot;relationType&quot;</span><span class="p">:</span><span class="s2">&quot;used_in&quot;</span><span class="p">}</span> </code></pre></div> <p><strong>Entity types</strong>: person, technology, project, event, organization, product, concept, research, feature, etc.</p> <p><strong>Relation types</strong>: leads, organizes, collaborates_with, uses, powers, built_on, implements, analyzed_in, supports, etc.</p> <h2 id="demo-data">Demo Data<a class="headerlink" href="#demo-data" title="Permanent link">&para;</a></h2> <p>The repo includes demo data at <code>/Users/sc/GitHub/memory-visualizer/memory.json</code>:</p> <ul> <li>16 entities across 9 types</li> <li>25 relationships</li> <li>Complex connections (AI research, enterprise systems, academic collaboration)</li> <li>Varied node sizes (1-10 observations)</li> </ul> <p>Use this to test the tools before using your own data.</p> <h2 id="technical-details">Technical Details<a class="headerlink" href="#technical-details" title="Permanent link">&para;</a></h2> <h3 id="web-visualizer">Web Visualizer<a class="headerlink" href="#web-visualizer" title="Permanent link">&para;</a></h3> <ul> <li><strong>D3.js</strong> for force-directed graph layout</li> <li><strong>Client-side processing</strong> (privacy-first)</li> <li><strong>Responsive design</strong> (works on mobile)</li> <li><strong>No backend required</strong></li> </ul> <h3 id="python-static-analysis">Python Static Analysis<a class="headerlink" href="#python-static-analysis" title="Permanent link">&para;</a></h3> <ul> <li><strong>NetworkX</strong> for graph analysis</li> <li><strong>Matplotlib</strong> for high-res visualization (300 DPI)</li> <li><strong>Metrics</strong>: degree centrality, betweenness, clustering</li> <li><strong>Output</strong>: PNG + terminal statistics</li> </ul> <h3 id="python-interactive">Python Interactive<a class="headerlink" href="#python-interactive" title="Permanent link">&para;</a></h3> <ul> <li><strong>PyVis</strong> for interactive HTML output</li> <li><strong>NetworkX</strong> for graph processing</li> <li><strong>Physics simulation</strong> for natural layout</li> <li><strong>HTML export</strong> for sharing</li> </ul> <h2 id="workflow-examples">Workflow Examples<a class="headerlink" href="#workflow-examples" title="Permanent link">&para;</a></h2> <h3 id="workflow-1-quick-check-web">Workflow 1: Quick Check (Web)<a class="headerlink" href="#workflow-1-quick-check-web" title="Permanent link">&para;</a></h3> <ol> <li>Open https://dzivkovi.github.io/mcp-memory-visualizer/</li> <li>Drop your memory.json</li> <li>Visually scan for:</li> <li>Disconnected entities (isolated nodes)</li> <li>Overly connected entities (hubs)</li> <li>Clusters (related concepts)</li> </ol> <h3 id="workflow-2-research-analysis-python-static">Workflow 2: Research Analysis (Python Static)<a class="headerlink" href="#workflow-2-research-analysis-python-static" title="Permanent link">&para;</a></h3> <ol> <li><code>cd /Users/sc/GitHub/memory-visualizer</code></li> <li><code>python visualize_memory.py &gt; analysis.txt</code></li> <li>Review terminal output for:</li> <li>Network statistics</li> <li>Centrality rankings</li> <li>Redundancy candidates</li> <li>Include <code>memory_graph.png</code> in your paper/report</li> </ol> <h3 id="workflow-3-deep-dive-python-interactive">Workflow 3: Deep Dive (Python Interactive)<a class="headerlink" href="#workflow-3-deep-dive-python-interactive" title="Permanent link">&para;</a></h3> <ol> <li><code>cd /Users/sc/GitHub/memory-visualizer</code></li> <li><code>python visualize_memory_interactive.py</code></li> <li>Open generated HTML in browser</li> <li>Explore with hover tooltips</li> <li>Share HTML file with collaborators</li> </ol> <h3 id="workflow-4-memory-cleanup">Workflow 4: Memory Cleanup<a class="headerlink" href="#workflow-4-memory-cleanup" title="Permanent link">&para;</a></h3> <ol> <li>Run static analysis: <code>python visualize_memory.py</code></li> <li>Identify:</li> <li><strong>Sparse nodes</strong>: Entities with &lt;2 observations (candidates for deletion)</li> <li><strong>Redundant entities</strong>: Similar names (e.g., "AI Project" vs "AI_Project")</li> <li><strong>Disconnected nodes</strong>: Entities with no relations (orphans)</li> <li>Manually edit memory.json or use Claude Desktop to refine memories</li> </ol> <h2 id="comparison-to-mjherichs-tool">Comparison to mjherich's Tool<a class="headerlink" href="#comparison-to-mjherichs-tool" title="Permanent link">&para;</a></h2> <p>If you want to try the React-based alternative:</p> <div class="highlight"><pre><span></span><code><a id="__codelineno-7-1" name="__codelineno-7-1" href="#__codelineno-7-1"></a><span class="nb">cd</span><span class="w"> </span>~/GitHub <a id="__codelineno-7-2" name="__codelineno-7-2" href="#__codelineno-7-2"></a>git<span class="w"> </span>clone<span class="w"> </span>https://github.com/mjherich/memory-visualizer.git<span class="w"> </span>mjherich-visualizer <a id="__codelineno-7-3" name="__codelineno-7-3" href="#__codelineno-7-3"></a><span class="nb">cd</span><span class="w"> </span>mjherich-visualizer <a id="__codelineno-7-4" name="__codelineno-7-4" href="#__codelineno-7-4"></a>npm<span class="w"> </span>install <a id="__codelineno-7-5" name="__codelineno-7-5" href="#__codelineno-7-5"></a>npm<span class="w"> </span>run<span class="w"> </span>dev </code></pre></div> <p><strong>Live demo</strong>: https://memviz.herich.tech</p> <p><strong>Pros:</strong> - More polished UI (React + TypeScript + TailwindCSS) - Better keyboard shortcuts (documented in CLAUDE.md) - Theme system (light/dark modes) - More active maintenance (12 stars, recent commits)</p> <p><strong>Cons:</strong> - Requires Node.js build setup (more complex) - Only one mode (interactive web) - No statistical analysis features - No export to PNG/HTML</p> <p><strong>When to use mjherich instead:</strong> - You prefer modern React UI - You want theme support - You don't need statistical analysis - You're already familiar with npm/Vite workflows</p> <h2 id="troubleshooting">Troubleshooting<a class="headerlink" href="#troubleshooting" title="Permanent link">&para;</a></h2> <h3 id="issue-file-not-found-when-running-python-scripts">Issue: "File not found" when running Python scripts<a class="headerlink" href="#issue-file-not-found-when-running-python-scripts" title="Permanent link">&para;</a></h3> <p><strong>Solution</strong>: Ensure you're in the correct directory:</p> <div class="highlight"><pre><span></span><code><a id="__codelineno-8-1" name="__codelineno-8-1" href="#__codelineno-8-1"></a><span class="nb">cd</span><span class="w"> </span>/Users/sc/GitHub/memory-visualizer <a id="__codelineno-8-2" name="__codelineno-8-2" href="#__codelineno-8-2"></a>ls<span class="w"> </span><span class="c1"># Should show: visualize_memory.py, memory.json, etc.</span> </code></pre></div> <h3 id="issue-matplotlib-building-font-cache">Issue: Matplotlib "building font cache"<a class="headerlink" href="#issue-matplotlib-building-font-cache" title="Permanent link">&para;</a></h3> <p><strong>Solution</strong>: This is normal on first run. Wait 30-60 seconds. Subsequent runs will be faster.</p> <h3 id="issue-modulenotfounderror">Issue: "ModuleNotFoundError"<a class="headerlink" href="#issue-modulenotfounderror" title="Permanent link">&para;</a></h3> <p><strong>Solution</strong>: Reinstall dependencies:</p> <div class="highlight"><pre><span></span><code><a id="__codelineno-9-1" name="__codelineno-9-1" href="#__codelineno-9-1"></a><span class="nb">cd</span><span class="w"> </span>/Users/sc/GitHub/memory-visualizer <a id="__codelineno-9-2" name="__codelineno-9-2" href="#__codelineno-9-2"></a>pip<span class="w"> </span>install<span class="w"> </span>-r<span class="w"> </span>requirements.txt </code></pre></div> <h3 id="issue-web-visualizer-not-loading-memoryjson">Issue: Web visualizer not loading memory.json<a class="headerlink" href="#issue-web-visualizer-not-loading-memoryjson" title="Permanent link">&para;</a></h3> <p><strong>Solution</strong>: Check file format. Must be JSONL (one JSON object per line), not pretty-printed JSON array.</p> <p><strong>Wrong:</strong> <div class="highlight"><pre><span></span><code><a id="__codelineno-10-1" name="__codelineno-10-1" href="#__codelineno-10-1"></a><span class="p">[</span> <a id="__codelineno-10-2" name="__codelineno-10-2" href="#__codelineno-10-2"></a><span class="w"> </span><span class="p">{</span><span class="nt">&quot;type&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;entity&quot;</span><span class="p">,</span><span class="w"> </span><span class="err">...</span><span class="p">},</span> <a id="__codelineno-10-3" name="__codelineno-10-3" href="#__codelineno-10-3"></a><span class="w"> </span><span class="p">{</span><span class="nt">&quot;type&quot;</span><span class="p">:</span><span class="w"> </span><span class="s2">&quot;relation&quot;</span><span class="p">,</span><span class="w"> </span><span class="err">...</span><span class="p">}</span> <a id="__codelineno-10-4" name="__codelineno-10-4" href="#__codelineno-10-4"></a><span class="p">]</span> </code></pre></div></p> <p><strong>Correct:</strong> <div class="highlight"><pre><span></span><code><a id="__codelineno-11-1" name="__codelineno-11-1" href="#__codelineno-11-1"></a><span class="p">{</span><span class="nt">&quot;type&quot;</span><span class="p">:</span><span class="s2">&quot;entity&quot;</span><span class="p">,</span><span class="err">...</span><span class="p">}</span> <a id="__codelineno-11-2" name="__codelineno-11-2" href="#__codelineno-11-2"></a><span class="p">{</span><span class="nt">&quot;type&quot;</span><span class="p">:</span><span class="s2">&quot;relation&quot;</span><span class="p">,</span><span class="err">...</span><span class="p">}</span> </code></pre></div></p> <h3 id="issue-memory-file-in-temporary-npm-cache-location">Issue: Memory file in temporary npm cache location<a class="headerlink" href="#issue-memory-file-in-temporary-npm-cache-location" title="Permanent link">&para;</a></h3> <p><strong>Solution</strong>: Configure persistent location (see "Finding Your Memory File" section above).</p> <h2 id="future-enhancements">Future Enhancements<a class="headerlink" href="#future-enhancements" title="Permanent link">&para;</a></h2> <p>Potential extensions (mentioned in repo): - Export formats (GraphML, GEXF, JSON) - Filtering options (entity types, date ranges) - Advanced metrics (betweenness centrality, clustering coefficients) - Memory editing capabilities (add/remove entities, relations)</p> <h2 id="related-tools">Related Tools<a class="headerlink" href="#related-tools" title="Permanent link">&para;</a></h2> <ul> <li><strong>Anthropic Memory MCP Server</strong>: https://github.com/modelcontextprotocol/servers/tree/main/src/memory</li> <li><strong>mjherich's visualizer</strong>: https://github.com/mjherich/memory-visualizer</li> <li><strong>cortexgraph</strong> (your temporal memory system): https://github.com/cortexgraphai/cortexgraph</li> </ul> <h2 id="credits">Credits<a class="headerlink" href="#credits" title="Permanent link">&para;</a></h2> <p><strong>Tool</strong>: dzivkovi/mcp-memory-visualizer <strong>GitHub</strong>: https://github.com/dzivkovi/mcp-memory-visualizer <strong>Live Demo</strong>: https://dzivkovi.github.io/mcp-memory-visualizer/ <strong>Philosophy</strong>: "Perfection is achieved, not when there is nothing more to add, but when there is nothing left to take away." - Antoine de Saint-Exupéry</p> <hr /> <p><strong>Installation verified</strong>: November 4, 2025 <strong>Tool version</strong>: Latest commit 7a0bb1e (Jun 20, 2025) <strong>Python dependencies</strong>: networkx, matplotlib, pyvis (installed) <strong>Status</strong>: Ready to use</p> </article> </div> <script>var target=document.getElementById(location.hash.slice(1));target&&target.name&&(target.checked=target.name.startsWith("__tabbed_"))</script> </div> <button type="button" class="md-top md-icon" data-md-component="top" hidden> <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M13 20h-2V8l-5.5 5.5-1.42-1.42L12 4.16l7.92 7.92-1.42 1.42L13 8z"/></svg> Back to top </button> </main> <footer class="md-footer"> <div class="md-footer-meta md-typeset"> <div class="md-footer-meta__inner md-grid"> <div class="md-copyright"> Made with <a href="https://squidfunk.github.io/mkdocs-material/" target="_blank" rel="noopener"> Material for MkDocs </a> </div> <div class="md-social"> <a href="https://github.com/prefrontal-systems/cortexgraph" target="_blank" rel="noopener" title="github.com" class="md-social__link"> <svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 512 512"><!--! 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