mine_run_template
Execute pre-built queries on Alliance of Genome Resources data to retrieve gene orthologs, GO terms, disease associations, and other genomic information using parameterized templates.
Instructions
Run a pre-built query template with parameters.
Parameter format: Use numeric keys ("1", "2", etc.) matching constraint positions.
Simple: {"1": "BRCA1"} - just the value
Full: {"1": {"path": "Gene", "op": "LOOKUP", "value": "BRCA1"}}
Common templates:
Gene_Orthologs: Find orthologs (params: {"1": {"path": "Gene", "op": "LOOKUP", "value": "HGNC:1100"}})
Gene_GOTerms: GO annotations for a gene
Gene_DOTerm: Disease annotations for a gene
GOTerm_Genes: Find genes by GO term
Use mine_list_templates to discover all available templates and their constraints.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| name | Yes | Template name (e.g., 'Gene_Orthologs') | |
| params | Yes | Template parameters with numeric keys, e.g., {'1': {'path': 'Gene', 'op': 'LOOKUP', 'value': 'HGNC:1100'}} | |
| limit | No | Maximum results |