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mine_get_lists

Retrieve available gene and protein lists from AllianceMine to access curated genomics data across model organisms.

Instructions

Get all available gene/protein lists in AllianceMine.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
typeNoFilter by type: Gene, Protein, etc.
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden of behavioral disclosure. It states it's a 'Get' operation, implying read-only behavior, but doesn't mention potential side effects, authentication needs, rate limits, or response format. For a tool with zero annotation coverage, this is insufficient to inform safe and effective use.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, efficient sentence that directly states the tool's purpose without unnecessary words. It's front-loaded with the core action and resource, making it easy to parse quickly.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness2/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the lack of annotations and output schema, the description is incomplete for effective use. It doesn't explain what 'lists' entail (e.g., format, content), how results are returned, or any constraints like pagination. For a tool with no structured behavioral data, more context is needed to ensure reliable agent operation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The schema description coverage is 100%, with the single parameter 'type' documented as 'Filter by type: Gene, Protein, etc.' The description adds no additional parameter information beyond what the schema provides, so it meets the baseline score of 3 for high schema coverage without compensating value.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the action ('Get') and resource ('all available gene/protein lists in AllianceMine'), making the purpose specific and understandable. However, it doesn't explicitly differentiate from sibling tools like 'mine_get_list' (singular) or 'mine_list_templates', leaving some ambiguity about scope.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus alternatives such as 'mine_get_list' (singular) or 'mine_list_templates'. It lacks context about prerequisites, typical use cases, or exclusions, leaving the agent to infer usage from the name alone.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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