MotherDuck's DuckDB MCP Server

An MCP server implementation that interacts with DuckDB and MotherDuck databases, providing SQL analytics capabilities to AI Assistants and IDEs.

Resources

• Close the Loop: Faster Data Pipelines with MCP, DuckDB & AI (Blogpost)

• Faster Data Pipelines development with MCP and DuckDB (YouTube)

Related MCP server: Duck Duck MCP

Features

• Hybrid execution: query data from local DuckDB or/and cloud-based MotherDuck databases

• Cloud storage integration: access data stored in Amazon S3 or other cloud storage thanks to MotherDuck's integrations

• Data sharing: create and share databases

• SQL analytics: use DuckDB's SQL dialect to query any size of data directly from your AI Assistant or IDE

• Serverless architecture: run analytics without needing to configure instances or clusters

Components

Prompts

The server provides one prompt:

• duckdb-motherduck-initial-prompt: A prompt to initialize a connection to DuckDB or MotherDuck and start working with it

Tools

The server offers one tool:

• query: Execute a SQL query on the DuckDB or MotherDuck database

  • Inputs:

    • query (string, required): The SQL query to execute

All interactions with both DuckDB and MotherDuck are done through writing SQL queries.

Result Limiting: Query results are automatically limited to prevent using up too much context:

• Maximum 1024 rows by default (configurable with --max-rows)

• Maximum 50,000 characters by default (configurable with --max-chars)

• Truncated responses include a note about truncation

Command Line Parameters

The MCP server supports the following parameters:

Quick Usage Examples

Getting Started

General Prerequisites

• uv installed, you can install it using pip install uv or brew install uv

If you plan to use the MCP with Claude Desktop or any other MCP comptabile client, the client need to be installed.

Prerequisites for DuckDB

• No prerequisites. The MCP server can create an in-memory database on-the-fly

• Or connect to an existing local DuckDB database file , or one stored on remote object storage (e.g., AWS S3).

See Connect to local DuckDB.

Prerequisites for MotherDuck

• Sign up for a MotherDuck account

• Generate an access token via the MotherDuck UI

• Store the token securely for use in the configuration

Usage with Cursor

1. Install Cursor from cursor.com/downloads if you haven't already

2. Open Cursor:

• To set it up globally for the first time, go to Settings->MCP and click on "+ Add new global MCP server".

• This will open a mcp.json file to which you add the following configuration:

Usage with VS Code

For the quickest installation, click one of the "Install with UV" buttons at the top.

Manual Installation

Add the following JSON block to your User Settings (JSON) file in VS Code. You can do this by pressing Ctrl + Shift + P and typing Preferences: Open User Settings (JSON).

Optionally, you can add it to a file called .vscode/mcp.json in your workspace. This will allow you to share the configuration with others.

Usage with Claude Desktop

1. Install Claude Desktop from claude.ai/download if you haven't already

2. Open the Claude Desktop configuration file:

• To quickly access it or create it the first time, open the Claude Desktop app, select Settings, and click on the "Developer" tab, finally click on the "Edit Config" button.

• Add the following configuration to your claude_desktop_config.json:

Important Notes:

• Replace YOUR_MOTHERDUCK_TOKEN_HERE with your actual MotherDuck token

Usage with Claude Code

Claude Code supports MCP servers through CLI commands or JSON configuration. Here are two ways to set it up:

Option 1: Using CLI Commands

Add the MotherDuck MCP server directly using the Claude Code CLI:

Option 2: Using JSON Configuration

Add the server using a JSON configuration:

Scoping Options:

• Use --local (default) for project-specific configuration

• Use --project to share the configuration with your team via .mcp.json

• Use --user to make the server available across all your projects

Important Notes:

• Replace YOUR_MOTHERDUCK_TOKEN_HERE with your actual MotherDuck token

• Claude Code also supports environment variable expansion, so you can use ${MOTHERDUCK_TOKEN} if you've set the environment variable

Securing your MCP Server when querying MotherDuck

If the MCP server is exposed to third parties and should only have read access to data, we recommend using a read scaling token and running the MCP server in SaaS mode.

Read Scaling Tokens are special access tokens that enable scalable read operations by allowing up to 4 concurrent read replicas, improving performance for multiple end users while restricting write capabilities. Refer to the Read Scaling documentation to learn how to create a read-scaling token.

SaaS Mode in MotherDuck enhances security by restricting it's access to local files, databases, extensions, and configurations, making it ideal for third-party tools that require stricter environment protection. Learn more about it in the SaaS Mode documentation.

Secure Configuration

Connect to local DuckDB

To connect to a local DuckDB, instead of using the MotherDuck token, specify the path to your local DuckDB database file or use :memory: for an in-memory database.

In-memory database:

Local DuckDB file:

Local DuckDB file in readonly mode:

Note: readonly mode for local file-backed DuckDB connections also makes use of short lived connections. Each time the query MCP tool is used a temporary, reaodnly connection is created + query is executed + connection is closed. This feature was motivated by a workflow where DBT was for modeling data within duckdb and then an MCP client (Windsurf/Cline/Claude/Cursor) was used for exploring the database. The short lived connections allow each tool to run and then release their connection, allowing the next tool to connect.

Connect to DuckDB on S3

You can connect to DuckDB databases stored on Amazon S3 by providing an S3 URL as the database path. The server will automatically configure the necessary S3 credentials from your environment variables.

Note: For S3 connections:

• AWS credentials must be provided via environment variables (AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY, and optionally AWS_DEFAULT_REGION)

• For temporary credentials (AWS SSO), set the AWS_SESSION_TOKEN environment variable (and optionally AWS_DEFAULT_REGION) to automatically use DuckDB's credential_chain provider.

• The S3 database is attached to an in-memory DuckDB instance

• The httpfs extension is automatically installed and configured for S3 access

• Both read and write operations are supported

Example Queries

Once configured, you can e.g. ask Claude to run queries like:

• "Create a new database and table in MotherDuck"

• "Query data from my local CSV file"

• "Join data from my local DuckDB database with a table in MotherDuck"

• "Analyze data stored in Amazon S3"

Running in SSE mode

The server can run in SSE mode in two ways:

Direct SSE mode

Run the server directly in SSE mode using the --transport sse flag:

This will start the server listening on the specified port (default 8000) and you can point your clients directly to this endpoint.

Using supergateway

Alternatively, you can run SSE mode using supergateway:

Both methods allow you to point your clients such as Claude Desktop, Cursor to the SSE endpoint.

Development configuration

To run the server from a local development environment, use the following configuration:

Troubleshooting

• If you encounter connection issues, verify your MotherDuck token is correct

• For local file access problems, ensure the --home-dir parameter is set correctly

• Check that the uvx command is available in your PATH

• If you encounter spawn uvx ENOENT errors, try specifying the full path to uvx (output of which uvx)

• In version previous for v0.4.0 we used environment variables, now we use parameters

License

This MCP server is licensed under the MIT License. This means you are free to use, modify, and distribute the software, subject to the terms and conditions of the MIT License. For more details, please see the LICENSE file in the project repository.

mcp-name: io.github.motherduckdb/mcp-server-motherduck