Omics AI MCP Server

#!/bin/bash # Complete Setup Script for Omics AI MCP on Google Cloud Run # This consolidates all setup steps into one script set -e echo "===================================================================" echo "=== Complete Setup for Omics AI MCP on Google Cloud Run ===" echo "===================================================================" echo # Check prerequisites echo "Checking prerequisites..." if ! command -v gcloud &> /dev/null; then echo "Error: gcloud CLI is not installed. Please install it first:" echo "brew install --cask google-cloud-sdk" exit 1 fi if ! command -v gh &> /dev/null; then echo "Error: GitHub CLI is not installed. Please install it first:" echo "brew install gh" exit 1 fi # Get project ID echo echo "Enter your Google Cloud Project ID:" read -r PROJECT_ID if [ -z "$PROJECT_ID" ]; then echo "Error: Project ID is required" exit 1 fi # Configuration REGION="us-central1" SERVICE_ACCOUNT_NAME="omics-ai-mcp-deployer" SERVICE_ACCOUNT_EMAIL="${SERVICE_ACCOUNT_NAME}@${PROJECT_ID}.iam.gserviceaccount.com" ARTIFACT_REGISTRY_REPO="cloud-run-images" echo echo "Configuration:" echo "- Project ID: $PROJECT_ID" echo "- Region: $REGION" echo "- Service Account: $SERVICE_ACCOUNT_EMAIL" echo "- Artifact Registry Repository: $ARTIFACT_REGISTRY_REPO" echo echo "Press Enter to continue or Ctrl+C to cancel..." read -r # Set the project echo echo "Setting Google Cloud project..." gcloud config set project "$PROJECT_ID" # Enable all required APIs echo echo "Enabling required Google Cloud APIs..." gcloud services enable cloudbuild.googleapis.com gcloud services enable run.googleapis.com gcloud services enable containerregistry.googleapis.com gcloud services enable artifactregistry.googleapis.com gcloud services enable iam.googleapis.com # Wait for APIs to be ready echo "Waiting for APIs to be fully enabled..." sleep 5 # Create service account if it doesn't exist echo echo "Creating service account (if not exists)..." if ! gcloud iam service-accounts describe $SERVICE_ACCOUNT_EMAIL &>/dev/null; then gcloud iam service-accounts create $SERVICE_ACCOUNT_NAME \ --display-name="Omics AI MCP Cloud Run Deployer" \ --description="Service account for deploying Omics AI MCP to Cloud Run" echo "Service account created successfully" else echo "Service account already exists" fi # Grant all necessary permissions echo echo "Granting permissions to service account..." ROLES=( "roles/run.admin" "roles/storage.admin" "roles/iam.serviceAccountUser" "roles/artifactregistry.admin" "roles/cloudbuild.builds.editor" ) for ROLE in "${ROLES[@]}"; do echo " Adding $ROLE..." gcloud projects add-iam-policy-binding $PROJECT_ID \ --member="serviceAccount:${SERVICE_ACCOUNT_EMAIL}" \ --role="$ROLE" \ --quiet done # Create Artifact Registry repository echo echo "Creating Artifact Registry repository (if not exists)..." if ! gcloud artifacts repositories describe $ARTIFACT_REGISTRY_REPO --location=$REGION &>/dev/null; then gcloud artifacts repositories create $ARTIFACT_REGISTRY_REPO \ --repository-format=docker \ --location=$REGION \ --description="Docker images for Cloud Run services" echo "Artifact Registry repository created successfully" else echo "Artifact Registry repository already exists" fi # Configure Docker authentication for Artifact Registry echo echo "Configuring Docker authentication for Artifact Registry..." gcloud auth configure-docker $REGION-docker.pkg.dev --quiet # Check if we're in a git repository if ! git rev-parse --git-dir &>/dev/null; then echo echo "Error: Not in a git repository. Please run this from your omics-ai-mcp directory." exit 1 fi # Get repository information REPO=$(gh repo view --json nameWithOwner -q .nameWithOwner 2>/dev/null || echo "") if [ -z "$REPO" ]; then echo echo "Error: Could not determine GitHub repository. Make sure you're authenticated with 'gh auth login'" exit 1 fi echo echo "Configuring GitHub repository secrets for: $REPO" # Create new service account key KEY_FILE="omics-ai-mcp-sa-key.json" echo "Creating service account key..." gcloud iam service-accounts keys create "$KEY_FILE" \ --iam-account=$SERVICE_ACCOUNT_EMAIL \ --quiet # Set GitHub secrets echo "Setting GitHub secrets..." gh secret set GCP_PROJECT_ID --body "$PROJECT_ID" gh secret set GCP_SERVICE_ACCOUNT_KEY < "$KEY_FILE" # Clean up key file rm -f "$KEY_FILE" # Display summary echo echo "===================================================================" echo "=== Setup Complete! ===" echo "===================================================================" echo echo "✅ All Google Cloud APIs enabled" echo "✅ Service account created with necessary permissions" echo "✅ Artifact Registry repository created" echo "✅ Docker authentication configured" echo "✅ GitHub secrets configured" echo echo "Next steps:" echo "1. Commit and push your code to trigger deployment:" echo " git add ." echo " git commit -m 'Deploy to Cloud Run'" echo " git push origin main" echo echo "2. Monitor deployment at:" echo " https://github.com/$REPO/actions" echo echo "3. Your service will be deployed to:" echo " https://omics-ai-mcp-<hash>-$REGION.a.run.app" echo echo "Docker images will be stored at:" echo " $REGION-docker.pkg.dev/$PROJECT_ID/$ARTIFACT_REGISTRY_REPO/omics-ai-mcp"