Medplum

// SPDX-FileCopyrightText: Copyright Orangebot, Inc. and Medplum contributors // SPDX-License-Identifier: Apache-2.0 import { SNOMED, UCUM, createReference } from '@medplum/core'; import type { DiagnosticReport, Observation, ObservationDefinition } from '@medplum/fhirtypes'; import { HomerDiagnosticReport } from '@medplum/mock'; export const TestosteroneDefinition: ObservationDefinition = { resourceType: 'ObservationDefinition', category: [ { coding: [ { system: 'https://foomedical.com/observationCategory', code: 'Reproductive', }, ], }, ], method: { text: 'Fingerstick', }, code: { coding: [ { system: 'https://foomedical.com', code: 'TESTOSTERONE', display: 'Testosterone', }, ], text: 'Testosterone', }, permittedDataType: ['Quantity'], quantitativeDetails: { unit: { coding: [ { code: 'ng/dL', display: 'ng/dL', system: UCUM, }, ], text: 'ng/dL', }, decimalPrecision: 1, }, qualifiedInterval: [ { condition: 'Normal', gender: 'male', range: { high: { value: 563, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 11, unit: 'years', system: UCUM, }, high: { value: 14, unit: 'years', system: UCUM, }, }, }, { condition: 'High', gender: 'male', range: { low: { value: 563.1, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 11, unit: 'years', system: UCUM, }, high: { value: 14, unit: 'years', system: UCUM, }, }, }, { condition: 'Low', gender: 'male', range: { high: { value: 48.9, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 15, unit: 'years', system: UCUM, }, high: { value: 19, unit: 'years', system: UCUM, }, }, }, { condition: 'Normal', gender: 'male', range: { low: { value: 49, unit: 'ng/dL', system: UCUM, }, high: { value: 769, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 15, unit: 'years', system: UCUM, }, high: { value: 19, unit: 'years', system: UCUM, }, }, }, { condition: 'High', gender: 'male', range: { low: { value: 769.1, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 15, unit: 'years', system: UCUM, }, high: { value: 19, unit: 'years', system: UCUM, }, }, }, { condition: 'Low', gender: 'male', range: { high: { value: 248.9, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 20, unit: 'years', system: UCUM, }, high: { value: 49, unit: 'years', system: UCUM, }, }, }, { condition: 'Normal', gender: 'male', range: { low: { value: 249, unit: 'ng/dL', system: UCUM, }, high: { value: 836, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 20, unit: 'years', system: UCUM, }, high: { value: 49, unit: 'years', system: UCUM, }, }, }, { condition: 'High', gender: 'male', range: { low: { value: 836.1, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 20, unit: 'years', system: UCUM, }, high: { value: 49, unit: 'years', system: UCUM, }, }, }, { condition: 'Low', gender: 'male', range: { high: { value: 192.9, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 50, unit: 'years', system: UCUM, }, }, }, { condition: 'Normal', gender: 'male', range: { low: { value: 193, unit: 'ng/dL', system: UCUM, }, high: { value: 740, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 50, unit: 'years', system: UCUM, }, }, }, { condition: 'High', gender: 'male', range: { low: { value: 740.1, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 50, unit: 'years', system: UCUM, }, }, }, { condition: 'Normal', gender: 'female', range: { high: { value: 52, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 11, unit: 'years', system: UCUM, }, high: { value: 19, unit: 'years', system: UCUM, }, }, }, { condition: 'High', gender: 'female', range: { low: { value: 52.1, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 11, unit: 'years', system: UCUM, }, high: { value: 19, unit: 'years', system: UCUM, }, }, }, { condition: 'Low', gender: 'female', range: { high: { value: 8.3, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 20, unit: 'years', system: UCUM, }, high: { value: 49, unit: 'years', system: UCUM, }, }, }, { condition: 'Normal', gender: 'female', range: { low: { value: 8.4, unit: 'ng/dL', system: UCUM, }, high: { value: 48.1, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 20, unit: 'years', system: UCUM, }, high: { value: 49, unit: 'years', system: UCUM, }, }, }, { condition: 'High', gender: 'female', range: { low: { value: 48.2, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 20, unit: 'years', system: UCUM, }, high: { value: 49, unit: 'years', system: UCUM, }, }, }, { condition: 'Low', gender: 'female', range: { high: { value: 2.8, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 50, unit: 'years', system: UCUM, }, }, }, { condition: 'Normal', gender: 'female', range: { low: { value: 2.9, unit: 'ng/dL', system: UCUM, }, high: { value: 40.8, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 50, unit: 'years', system: UCUM, }, }, }, { condition: 'High', gender: 'female', range: { low: { value: 40.9, unit: 'ng/dL', system: UCUM, }, }, age: { low: { value: 50, unit: 'years', system: UCUM, }, }, }, ], id: 'testosterone-definition', }; export const HDLDefinition: ObservationDefinition = { resourceType: 'ObservationDefinition', category: [ { coding: [ { system: 'https://foomedical.com/observationCategory', code: 'Heart', }, ], }, ], method: { text: 'Fingerstick', }, code: { coding: [ { system: 'https://foomedical.com', code: 'HDL', display: 'HDL', }, ], text: 'HDL', }, permittedDataType: ['Quantity'], quantitativeDetails: { unit: { coding: [ { code: 'mg/dL', display: 'mg/dL', system: UCUM, }, ], text: 'mg/dL', }, decimalPrecision: 0, }, qualifiedInterval: [ { condition: 'Major risk', range: { high: { value: 39, unit: 'mg/dL', system: UCUM, }, }, }, { condition: 'Normal risk', range: { low: { value: 40, unit: 'mg/dL', system: UCUM, }, high: { value: 60, unit: 'mg/dL', system: UCUM, }, }, }, { condition: 'Negative risk', range: { low: { value: 61, unit: 'mg/dL', system: UCUM, }, }, }, ], }; export const CreatinineObservation: Observation = { id: 'obs-1', resourceType: 'Observation', status: 'final', category: [{ text: 'Kidney' }, { text: 'Day 2' }], code: { coding: [ { system: 'https://intranet.aumc.nl/labtestcodes', code: '20005', display: 'Creatinine(Serum)', }, ], }, subject: { reference: 'Patient/f201', display: 'Roel', }, issued: '2013-04-04T14:34:00+01:00', performer: [ { reference: 'Practitioner/123', display: 'Dr. Alice Smith', }, ], valueQuantity: { value: 122, unit: 'umol/L', system: SNOMED, code: '258814008', }, interpretation: [ { coding: [ { system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation', code: 'H', }, ], }, ], referenceRange: [ { low: { value: 64, }, high: { value: 104, }, type: { coding: [ { system: 'http://terminology.hl7.org/CodeSystem/referencerange-meaning', code: 'normal', display: 'Normal Range', }, ], }, }, ], note: [ { text: 'Previously reported as 167 mg/dL on 2/3/2023, 8:40:14 PM', authorReference: { reference: 'Practitioner/123', display: 'Dr. Alice Smith' }, }, { text: 'Previously reported as 10 mg/dL on 2/1/2023, 8:40:14 PM Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat.', }, ], }; export const ExampleReport: DiagnosticReport = { ...HomerDiagnosticReport, resourceType: 'DiagnosticReport', id: 'report-1', status: 'final', category: [ { coding: [ { system: SNOMED, code: '15220000', display: 'Laboratory test', }, { system: 'http://terminology.hl7.org/CodeSystem/v2-0074', code: 'LAB', }, ], }, ], issued: '2013-03-11T10:28:00+01:00', performer: [ { reference: 'Organization/123', display: 'Test Organization', }, ], result: [createReference(CreatinineObservation)], conclusion: 'All observations within normal limits', }; export const KidneyLabDefinition: ObservationDefinition = { resourceType: 'ObservationDefinition', category: [ { coding: [ { system: 'https://foomedical.com/observationCategory', code: 'Nephrology', }, ], }, ], code: { coding: [ { system: 'https://loinc.org', code: '14959-1', display: 'Microalbumin/Creat Ur', }, ], text: 'Albumin/Creatinine, Urine', }, permittedDataType: ['Quantity'], quantitativeDetails: { unit: { coding: [ { code: 'mg/g{creat}', display: 'mg/g', system: UCUM, }, ], text: 'mg/g', }, decimalPrecision: 0, }, qualifiedInterval: [ { condition: 'Roche range', category: 'absolute', range: { low: { value: 29, unit: 'mg/g', system: UCUM, }, high: { value: 226, unit: 'mg/g', system: UCUM, }, }, }, { condition: 'Normal', category: 'reference', range: { low: { value: 0, unit: 'mg/dL', system: UCUM, }, high: { value: 29, unit: 'mg/dL', system: UCUM, }, }, }, { condition: 'Microalbuminuria', category: 'reference', range: { low: { value: 30, unit: 'mg/g', system: UCUM, }, high: { value: 299, unit: 'mg/g', system: UCUM, }, }, }, { condition: 'Clinical Albuminuria', category: 'reference', range: { low: { value: 300, unit: 'mg/g', system: UCUM, }, }, }, ], };