Medplum

// SPDX-FileCopyrightText: Copyright Orangebot, Inc. and Medplum contributors // SPDX-License-Identifier: Apache-2.0 import type { InternalTypeSchema } from '@medplum/core'; import { HTTP_HL7_ORG, buildElementsContext, isProfileLoaded, loadDataType, tryGetProfile } from '@medplum/core'; import { readJson } from '@medplum/definitions'; import type { StructureDefinition } from '@medplum/fhirtypes'; import { MockClient } from '@medplum/mock'; import { assignValuesIntoSlices, prepareSlices } from './ResourceArrayInput.utils'; const medplum = new MockClient(); describe('assignValuesIntoSlices', () => { let USCoreStructureDefinitions: StructureDefinition[]; beforeAll(() => { USCoreStructureDefinitions = readJson('fhir/r4/testing/uscore-v5.0.1-structuredefinitions.json'); }); describe('US Core Patient', () => { const profileUrl = `${HTTP_HL7_ORG}/fhir/us/core/StructureDefinition/us-core-patient`; const profilesToLoad = [ profileUrl, `${HTTP_HL7_ORG}/fhir/us/core/StructureDefinition/us-core-race`, `${HTTP_HL7_ORG}/fhir/us/core/StructureDefinition/us-core-ethnicity`, `${HTTP_HL7_ORG}/fhir/us/core/StructureDefinition/us-core-birthsex`, `${HTTP_HL7_ORG}/fhir/us/core/StructureDefinition/us-core-genderIdentity`, ]; let patientSD: StructureDefinition; let patientSchema: InternalTypeSchema; beforeAll(() => { patientSD = USCoreStructureDefinitions.find((sd) => sd.url === profileUrl) as StructureDefinition; expect(patientSD).toBeDefined(); for (const url of profilesToLoad) { const sd = USCoreStructureDefinitions.find((sd) => sd.url === url); if (!sd) { fail(`could not find structure definition for ${url}`); } loadDataType(sd); } expect(isProfileLoaded(profileUrl)).toBe(true); patientSchema = tryGetProfile(profileUrl) as InternalTypeSchema; expect(patientSchema).toBeDefined(); }); test('Patient.extension (race, ethnicity, birthsex, genderIdentity)', async () => { const patient = { id: 'homer-simpson', extension: [ { extension: [ { url: 'text', valueString: 'Some text', }, ], url: 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-race', }, { extension: [ { url: 'text', valueString: 'Some text', }, ], url: 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-ethnicity', }, { url: 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-birthsex', valueCode: 'F', }, { url: 'http://hl7.org/fhir/us/core/StructureDefinition/us-core-genderIdentity', valueCodeableConcept: { coding: [ { system: 'http://terminology.hl7.org/CodeSystem/v3-NullFlavor', code: 'ASKU', display: 'asked but unknown', }, ], text: 'asked but unknown', }, }, ], }; const property = patientSchema.elements['extension']; const elementsContext = buildElementsContext({ parentContext: undefined, elements: patientSchema.elements, path: 'Patient', profileUrl, }); if (!elementsContext) { fail('elementsContext should be defined'); } const slices = await prepareSlices({ medplum, property, }); expect(slices.length).toBe(4); const slicedValues = assignValuesIntoSlices( patient.extension, slices, property.slicing, elementsContext.profileUrl ); expect(slicedValues.map((sliceValues) => sliceValues.length)).toStrictEqual([1, 1, 1, 1, 0]); }); }); describe('US Core Blood Pressure', () => { const profileUrl = `${HTTP_HL7_ORG}/fhir/us/core/StructureDefinition/us-core-blood-pressure`; let bpSD: StructureDefinition; let bpSchema: InternalTypeSchema; beforeAll(() => { bpSD = USCoreStructureDefinitions.find((sd) => sd.url === profileUrl) as StructureDefinition; expect(bpSD).toBeDefined(); loadDataType(bpSD); expect(isProfileLoaded(profileUrl)).toBe(true); bpSchema = tryGetProfile(profileUrl) as InternalTypeSchema; expect(bpSchema).toBeDefined(); }); test('Observation.category (VSCat)', async () => { const resource = { category: [ { coding: [ { system: 'http://terminology.hl7.org/CodeSystem/observation-category', code: 'vital-signs', }, ], }, ], }; const property = bpSchema.elements['category']; const elementsContext = buildElementsContext({ parentContext: undefined, elements: bpSchema.elements, path: 'Observation', profileUrl, }); if (!elementsContext) { fail('elementsContext should be defined'); } const slices = await prepareSlices({ medplum, property, }); expect(slices.length).toBe(1); const slicedValues = assignValuesIntoSlices( resource.category, slices, property.slicing, elementsContext.profileUrl ); expect(slicedValues.map((sliceValues) => sliceValues.length)).toStrictEqual([1, 0]); }); test('Observation.component (systolic and diastolic)', async () => { const resource = { component: [ { code: { coding: [ { system: 'http://loinc.org', code: '8480-6', }, ], text: 'Systolic blood pressure', }, valueQuantity: { value: 109, unit: 'mmHg', system: 'http://unitsofmeasure.org', code: 'mm[Hg]', }, }, { code: { coding: [ { system: 'http://loinc.org', code: '8462-4', }, ], text: 'Diastolic blood pressure', }, valueQuantity: { value: 49, unit: 'mmHg', system: 'http://unitsofmeasure.org', code: 'mm[Hg]', }, }, ], }; const property = bpSchema.elements['component']; const elementsContext = buildElementsContext({ parentContext: undefined, elements: bpSchema.elements, path: 'Observation', profileUrl, }); if (!elementsContext) { fail('elementsContext should be defined'); } const slices = await prepareSlices({ medplum, property, }); const slicedValues = assignValuesIntoSlices( resource.component, slices, property.slicing, elementsContext.profileUrl ); expect(slices.length).toBe(2); expect(slicedValues.map((sliceValues) => sliceValues.length)).toStrictEqual([1, 1, 0]); }); }); });