Medplum

// SPDX-FileCopyrightText: Copyright Orangebot, Inc. and Medplum contributors // SPDX-License-Identifier: Apache-2.0 import { SNOMED, createReference, indexSearchParameterBundle, indexStructureDefinitionBundle } from '@medplum/core'; import { SEARCH_PARAMETER_BUNDLE_FILES, readJson } from '@medplum/definitions'; import type { Bundle, Patient, SearchParameter, ServiceRequest, Specimen } from '@medplum/fhirtypes'; import { MockClient } from '@medplum/mock'; import * as dotenv from 'dotenv'; import { afterEach, beforeAll, beforeEach, describe, expect, test, vi } from 'vitest'; import { createOrmMessage, handler } from './send-orm-message'; dotenv.config({ quiet: true }); const CONNECTION_DETAILS = { SFTP_USER: { name: 'SFTP_USER', valueString: 'user' }, SFTP_HOST: { name: 'SFTP_HOST', valueString: '123456.transfer.us-east-1.amazonaws.com' }, SFTP_PRIVATE_KEY: { name: 'SFTP_PRIVATE_KEY', valueString: process.env.PRIVATE_KEY }, }; vi.mock('ssh2-sftp-client'); describe('Send to Partner Lab', () => { beforeAll(() => { indexStructureDefinitionBundle(readJson('fhir/r4/profiles-types.json') as Bundle); indexStructureDefinitionBundle(readJson('fhir/r4/profiles-resources.json') as Bundle); for (const filename of SEARCH_PARAMETER_BUNDLE_FILES) { indexSearchParameterBundle(readJson(filename) as Bundle<SearchParameter>); } }); beforeEach(async (ctx: any) => { const medplum = new MockClient(); const patient = await medplum.createResource({ resourceType: 'Patient', name: [ { given: ['Bob'], family: 'Smith', }, ], birthDate: '1993-11-12', address: [ { line: ['1601 S Brazier St'], city: 'Coonrod', state: 'TX', postalCode: '77301', }, ], identifier: [ { system: ' http://example.com/patientId', value: 'W6IOS157', }, ], telecom: [ { system: 'phone', value: '(111) 222-3456', }, ], gender: 'male', }); const requestingPhysician = await medplum.createResource({ resourceType: 'Practitioner', name: [ { prefix: ['Dr.'], given: ['Bill'], family: 'Ogden', }, ], gender: 'male', }); let specimen = await medplum.createResource<Specimen>({ resourceType: 'Specimen', subject: createReference(patient), type: { coding: [ { system: SNOMED, code: '122554006', display: 'Capillary blood specimen', }, ], }, collection: { collectedDateTime: '2023-02-14T14:05:33-06:00', }, receivedTime: '2023-02-16T00:53:51.965Z', }); const order = await medplum.createResource({ resourceType: 'ServiceRequest', subject: createReference(patient), requester: createReference(requestingPhysician), status: 'completed', intent: 'order', authoredOn: '2023-01-30T18:31:34.929Z', specimen: [createReference(specimen)], identifier: [ { system: 'http://example.com/orderId', value: '145632', }, ], }); specimen = await medplum.updateResource({ ...specimen, request: [createReference(order)] } as Specimen); Object.assign(ctx, { medplum, patient, requestingPhysician, order, specimen }); }); beforeEach(() => { vi.useFakeTimers(); }); afterEach(() => { vi.useRealTimers(); vi.clearAllMocks(); }); test.skip('Test Connection', async (ctx: any) => { try { await handler(ctx.medplum, { bot: { reference: 'Bot/123' }, input: ctx.order, contentType: 'string', secrets: { ...CONNECTION_DETAILS }, }); } catch { console.error('Here'); } }); test(`ORM Message Format`, async (ctx: any) => { const serviceRequest: ServiceRequest = ctx.order; vi.setSystemTime(new Date('2023-02-10T09:25:00Z')); const message = createOrmMessage(serviceRequest, ctx.patient as Patient, ctx.specimen as Specimen); expect(message?.toString()).toBe(TEST_MESSAGE); }); }); const TEST_MESSAGE = `MSH|^~\\&||52054||ACME_LAB|202302100925||ORM^O01||P|2.3||||||| PID|1|145632|145632||Smith^Bob||19931112|M||||||||||| ORC|NW|145632|||R||||202302100925||||52054|||||| OBR|1|145632||8167^PANEL B FULL^^PANEL B FULL||202302100925|202302142005||||||||||||||||||||^^^^^R||||||`;