OpenGenes MCP Server

#!/bin/bash # Script to remove sensitive files from git history # WARNING: This will rewrite git history - make sure to backup first! echo "🚨 WARNING: This script will rewrite git history!" echo "Make sure you have:" echo "1. Revoked all API keys found in .env files" echo "2. Backed up your repository" echo "3. Coordinated with team members if this is a shared repo" echo "" read -p "Continue? (y/N): " -n 1 -r echo if [[ ! $REPLY =~ ^[Yy]$ ]]; then echo "Aborted." exit 1 fi echo "🧹 Removing sensitive files from git history..." # Remove .env file and log files from history echo "Using git filter-branch..." git filter-branch --force --index-filter \ 'git rm --cached --ignore-unmatch .env git rm --cached --ignore-unmatch logs/*.log git rm --cached --ignore-unmatch logs/*.json' \ --prune-empty --tag-name-filter cat -- --all # Clean up refs echo "🧹 Cleaning up refs..." git for-each-ref --format='delete %(refname)' refs/original | git update-ref --stdin git reflog expire --expire=now --all git gc --prune=now echo "" echo "✅ Cleanup complete!" echo "" echo "🔄 Next steps:" echo "1. Force push to remote: git push origin --force --all" echo "2. Force push tags: git push origin --force --tags" echo "3. Ask collaborators to clone fresh copy" echo "4. Create new API keys and add them to new .env file" echo "" echo "⚠️ Note: .env and log files are now properly ignored by .gitignore"