#!/usr/bin/env python3
"""
Basic usage example for gget-mcp server.
This script demonstrates how to create and interact with the gget MCP server
for testing purposes.
"""
import asyncio
from gget_mcp.server import GgetMCP
async def test_gget_functions():
"""Test basic gget functionality through the MCP server."""
# Create server instance
server = GgetMCP()
print("ā
gget-mcp server created successfully")
# Test 1: Search for genes
print("\nš Testing gene search...")
try:
search_result = await server.search_genes(
search_terms=["BRCA1"],
species="homo_sapiens",
limit=5
)
print(f"Search result: {search_result.success}")
if search_result.success:
print(f"Message: {search_result.message}")
else:
print(f"Error: {search_result.message}")
except Exception as e:
print(f"Search failed: {e}")
# Test 2: Get gene information
print("\nš Testing gene info retrieval...")
try:
info_result = await server.get_gene_info(
ensembl_ids=["ENSG00000012048"], # BRCA1
verbose=True
)
print(f"Info result: {info_result.success}")
if info_result.success:
print(f"Message: {info_result.message}")
else:
print(f"Error: {info_result.message}")
except Exception as e:
print(f"Info retrieval failed: {e}")
# Test 3: Get sequences
print("\nš§¬ Testing sequence retrieval...")
try:
seq_result = await server.get_sequences(
ensembl_ids=["ENSG00000012048"], # BRCA1
translate=False,
isoforms=False
)
print(f"Sequence result: {seq_result.success}")
if seq_result.success:
print(f"Message: {seq_result.message}")
else:
print(f"Error: {seq_result.message}")
except Exception as e:
print(f"Sequence retrieval failed: {e}")
# Test 4: BLAST a short sequence
print("\nš„ Testing BLAST...")
try:
blast_result = await server.blast_sequence(
sequence="ATGAAAGAAACCGCCGTCCTGTCAGCCCTGGCC",
program="blastn",
database="nt",
limit=5
)
print(f"BLAST result: {blast_result.success}")
if blast_result.success:
print(f"Message: {blast_result.message}")
else:
print(f"Error: {blast_result.message}")
except Exception as e:
print(f"BLAST failed: {e}")
# Test 5: Get reference genome info
print("\nš Testing reference genome info...")
try:
ref_result = await server.get_reference(
species="homo_sapiens",
which="dna"
)
print(f"Reference result: {ref_result.success}")
if ref_result.success:
print(f"Message: {ref_result.message}")
else:
print(f"Error: {ref_result.message}")
except Exception as e:
print(f"Reference retrieval failed: {e}")
print("\nāØ Basic usage test completed!")
def main():
"""Main function to run the test."""
print("š Starting gget-mcp basic usage test...")
asyncio.run(test_gget_functions())
if __name__ == "__main__":
main()
